View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20376_low_14 (Length: 331)
Name: NF20376_low_14
Description: NF20376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20376_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 5 - 291
Target Start/End: Complemental strand, 8885057 - 8884775
Alignment:
| Q |
5 |
tagataattctatttgaatgtaacaaaataataataattctattcaagacgtgtcggtactaaatgtaaatattaattttatatttgagccttgatatgc |
104 |
Q |
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| T |
8885057 |
tagataattctatttgaatgtaacaaaataataataattctattcaagatgtgccggtactaaatgtaaatattaattttatatttgagccttgatatgc |
8884958 |
T |
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| Q |
105 |
gatattgtgagagtctagctcattccgttagacgatattgtgagagtctaactctttccgttagattgaacttgttgatcgtttttaacgggttttattg |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8884957 |
gatattgtgagagtctagctcattccgttagacgatattgtaagagtctaactcattccattagattgaacttgttgatcgtttttaacgggttttattg |
8884858 |
T |
|
| Q |
205 |
tatatataagttagaaatgtgaaggtcatttggtgcatttatctataccatcattatgtaaatgaaacttgaaaggtaacttctctc |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
8884857 |
tatatataagttagaaatgtgaaggtcatttggtgcatttatctatac---cattatgtaaatg-aacttgaaaggtaacttctctc |
8884775 |
T |
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