View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20376_low_17 (Length: 304)
Name: NF20376_low_17
Description: NF20376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20376_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 9e-67; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 122 - 287
Target Start/End: Complemental strand, 2454528 - 2454363
Alignment:
| Q |
122 |
aaggatcaagccaccatagatgatagttaaaagtaaaattaatgtgtttcgctttcagtcctcagtaagattgtagtttaattttatcgagaagttgttg |
221 |
Q |
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| T |
2454528 |
aaggatcaagccaccatagatgatagttaaaagcaaaattaatgtgtttcgctttcaaccatcagtaagattgtagtttaattttatcgagaagttgttg |
2454429 |
T |
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| Q |
222 |
taacgatttctctttttgatgnnnnnnncccgaggttaaatatgtacaaaagttaatatatgtttg |
287 |
Q |
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| T |
2454428 |
taacgatttctctttttgatgaaaataacccgaggttaaatatgtacaaaagttaatatatgtttg |
2454363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 2454628 - 2454535
Alignment:
| Q |
1 |
ttaaatacaaagggtgacgnnnnnnnctaggatgaaaaagtcaaattacaacaacatgcaataaagacgagnnnnnnngaggtcaaaacaaccc |
94 |
Q |
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| T |
2454628 |
ttaaatacaaagggtgacgaaaaaaactaggatgaaaaagtcaaattaaaacaacatgcaataaagacgagaaaaaaagaggtcaaaacaaccc |
2454535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 116 - 238
Target Start/End: Complemental strand, 11274826 - 11274704
Alignment:
| Q |
116 |
aagttaaaggatcaagccaccatagatgatagttaaaagtaaaattaatgtgtttcgctttcagtcctcagtaagattgtagtttaattttatcgagaag |
215 |
Q |
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||||||||| |||||| ||| ||| |||||| ||||||||||||||||| |||| ||||||| ||| | ||| |||||||||||||||| ||| ||| |
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| T |
11274826 |
aagttaaagcatcaagtcacaataaatgataattaaaagtaaaattaatctgttccgctttcggtcactaataatattgtagtttaattttgtcgcaaag |
11274727 |
T |
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| Q |
216 |
ttgttgtaacgatttctcttttt |
238 |
Q |
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||| ||||| |||| |||||||| |
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| T |
11274726 |
ttgatgtaatgattcctcttttt |
11274704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 98 - 229
Target Start/End: Complemental strand, 46760598 - 46760463
Alignment:
| Q |
98 |
ataaggtgattctcaaataagttaaaggatcaagccaccatagatgatagttaaaagtaaaattaatgtgtttcgctttcagtcctcagtaagattg-ta |
196 |
Q |
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||||||||||| ||||||||||||||||| || |||||||| |||||||| |||||||||||||||| | |||||||||| | ||| |||||||| | |
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| T |
46760598 |
ataaggtgatttccaaataagttaaaggattaaaccaccatatatgatagtcaaaagtaaaattaatgcgcttcgctttcaaccatcaataagattgatt |
46760499 |
T |
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| Q |
197 |
gt---ttaattttatcgagaagttgttgtaacgatt |
229 |
Q |
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| T |
46760498 |
gtgccttaattttgtcgagaagttgttgtaatgatt |
46760463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 24448161 - 24448206
Alignment:
| Q |
133 |
caccatagatgatagttaaaagtaaaattaatgtgtttcgctttca |
178 |
Q |
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| T |
24448161 |
caccatatgtgatagttaaaagtaaaattgatgtgtttcgctttca |
24448206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 221
Target Start/End: Complemental strand, 42689451 - 42689350
Alignment:
| Q |
120 |
taaaggatcaagccaccatagatgatagttaaaagtaaaattaatgtgtttcgctttcagtcctcagtaagattgtagtttaattttatcgagaagttgt |
219 |
Q |
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|||||||| ||||||||| | |||||| ||||| ||||||||| | ||| ||||||||| | |||||||||| || |||||||| || ||||||||| |
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| T |
42689451 |
taaaggattaagccaccacaagtgataggtaaaaacaaaattaattttattcactttcagtcattagtaagattgaagcttaattttgtcaagaagttgt |
42689352 |
T |
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| Q |
220 |
tg |
221 |
Q |
| |
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|| |
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| T |
42689351 |
tg |
42689350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 39507303 - 39507343
Alignment:
| Q |
189 |
agattgtagtttaattttatcgagaagttgttgtaacgatt |
229 |
Q |
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|||||||||||||||||| || ||||||||| ||||||||| |
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| T |
39507303 |
agattgtagtttaattttgtcaagaagttgtggtaacgatt |
39507343 |
T |
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