View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20376_low_18 (Length: 249)
Name: NF20376_low_18
Description: NF20376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20376_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 38827214 - 38826982
Alignment:
| Q |
1 |
acatttccaacattaagttattcaactgacttgaaactaccaagtttggatacagagtgtgtaatatgtctctcagaattcacaaaaggtgaaaaggtgc |
100 |
Q |
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| T |
38827214 |
acatttccaacagtaagttattcaactgagttaaaactaccaactttggatacagagtgtgtgatatgtctctcagaattcacaaaaggtgaaaaggtgc |
38827115 |
T |
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| Q |
101 |
gcattttacctaaatgcaatcatggtttccatgttcgttgcatcgacaaatggctaaaggcacactcatcatgccctaagtgcagacagtgcctccttga |
200 |
Q |
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| T |
38827114 |
gcattttgcctaaatgcaatcatggtttccatgttcgttgcatcgacaaatggctaaaatcacactcatcatgccctaagtgcagacagtgcctccttga |
38827015 |
T |
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| Q |
201 |
gacttgtcgaaagattgttggattggaagcacc |
233 |
Q |
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| T |
38827014 |
gacttgtcgaaagattgttggatcggaagcacc |
38826982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 38846822 - 38846590
Alignment:
| Q |
1 |
acatttccaacattaagttattcaactgacttgaaactaccaagtttggatacagagtgtgtaatatgtctctcagaattcacaaaaggtgaaaaggtgc |
100 |
Q |
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| T |
38846822 |
acattcccaacagtaagttattcaactgagttgaaactaccaactttggatacagagtgtgtgatatgtctctcagaattcacaaaaggtgaaaaggtgc |
38846723 |
T |
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| Q |
101 |
gcattttacctaaatgcaatcatggtttccatgttcgttgcatcgacaaatggctaaaggcacactcatcatgccctaagtgcagacagtgcctccttga |
200 |
Q |
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| T |
38846722 |
gcattttgcctaaatgcaatcatggtttccatgttcgttgcatcgacaaatggctaaaatcacactcatcatgccctaagtgcagacagtgcctccttga |
38846623 |
T |
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| Q |
201 |
gacttgtcgaaagattgttggattggaagcacc |
233 |
Q |
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| T |
38846622 |
gacttgtcgaaagattgttggatcggaagcacc |
38846590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 38840981 - 38840786
Alignment:
| Q |
22 |
tcaactgacttgaaactaccaagtttggatacagagtgtgtaatatgtctctcagaattcacaaaaggtgaaaaggtgcgcattttacctaaatgcaatc |
121 |
Q |
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||||||||||||||||||||||||||||| |||| ||| | |||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| | |
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| T |
38840981 |
tcaactgacttgaaactaccaagtttggacgcagaatgtatgatatgtctctcagagttcacaaagggtgaaaaggtgcgcattttgcctaaatgcaacc |
38840882 |
T |
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| Q |
122 |
atggtttccatgttcgttgcatcgacaaatggctaaaggcacactcatcatgccctaagtgcagacagtgcctccttgagacttgtcgaaagattg |
217 |
Q |
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| T |
38840881 |
atggatttcatgttcgttgcattgacaaatggctaaaagaacattcatcatgtccaaagtgcagacaatgtcttcttgaaacttgtcgaaagattg |
38840786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 38858719 - 38858524
Alignment:
| Q |
22 |
tcaactgacttgaaactaccaagtttggatacagagtgtgtaatatgtctctcagaattcacaaaaggtgaaaaggtgcgcattttacctaaatgcaatc |
121 |
Q |
| |
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||||||||||||||||||||||||||||| |||| ||| | |||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| | |
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| T |
38858719 |
tcaactgacttgaaactaccaagtttggacgcagaatgtatgatatgtctctcagagttcacaaagggtgaaaaggtgcgcattttgcctaaatgcaacc |
38858620 |
T |
|
| Q |
122 |
atggtttccatgttcgttgcatcgacaaatggctaaaggcacactcatcatgccctaagtgcagacagtgcctccttgagacttgtcgaaagattg |
217 |
Q |
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|||| || |||||||||||||| |||||||||||||| | ||| |||||||| || ||||||||||| || || ||||| |||||||||||||||| |
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| T |
38858619 |
atggatttcatgttcgttgcattgacaaatggctaaaagaacattcatcatgtccaaagtgcagacaatgtcttcttgaaacttgtcgaaagattg |
38858524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 38865051 - 38864851
Alignment:
| Q |
19 |
tattcaactgacttgaaactaccaagtttggatacagagtgtgtaatatgtctctcagaattcacaaaaggtgaaaaggtgcgcattttacctaaatgca |
118 |
Q |
| |
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|||||| |||| |||||||| ||||||||||||||||||||| | |||||||||||||| || ||||| |||||||||||||||||||| |||||||||| |
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| T |
38865051 |
tattcagctgagttgaaacttccaagtttggatacagagtgtattatatgtctctcagagtttacaaagggtgaaaaggtgcgcattttgcctaaatgca |
38864952 |
T |
|
| Q |
119 |
atcatggtttccatgttcgttgcatcgacaaatggctaaaggcacactcatcatgccctaagtgcagacagtgcctccttgagacttgtcgaaagattgt |
218 |
Q |
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| T |
38864951 |
accatggatttcacgttcgttgcattgacaaatggctaaaggaacacccatcatgtccaaagtgtagacaatgtcttcttgaaacttgtagaaagattgt |
38864852 |
T |
|
| Q |
219 |
t |
219 |
Q |
| |
|
| |
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|
| T |
38864851 |
t |
38864851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 31 - 217
Target Start/End: Original strand, 38850932 - 38851118
Alignment:
| Q |
31 |
ttgaaactaccaagtttggatacagagtgtgtaatatgtctctcagaattcacaaaaggtgaaaaggtgcgcattttacctaaatgcaatcatggtttcc |
130 |
Q |
| |
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||||| |||||||||||||||||||| ||| | |||||||||||||| |||||||| |||||||| |||||||||| ||||||||||| ||||| || | |
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| T |
38850932 |
ttgaatctaccaagtttggatacagattgtatgatatgtctctcagagttcacaaagggtgaaaaattgcgcattttgcctaaatgcaaccatggatttc |
38851031 |
T |
|
| Q |
131 |
atgttcgttgcatcgacaaatggctaaaggcacactcatcatgccctaagtgcagacagtgcctccttgagacttgtcgaaagattg |
217 |
Q |
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||||||||||||| |||||||||||||| | ||| |||||||| || ||||||||||| || || ||||| |||||||||||||||| |
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| T |
38851032 |
atgttcgttgcattgacaaatggctaaaagaacattcatcatgtccaaagtgcagacaatgtcttcttgaaacttgtcgaaagattg |
38851118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 31 - 217
Target Start/End: Complemental strand, 38861584 - 38861398
Alignment:
| Q |
31 |
ttgaaactaccaagtttggatacagagtgtgtaatatgtctctcagaattcacaaaaggtgaaaaggtgcgcattttacctaaatgcaatcatggtttcc |
130 |
Q |
| |
|
||||| |||||||||||||||||||| ||| | |||||||||||||| |||||||| |||||||| |||||||||| ||||||||||| ||||| || | |
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| T |
38861584 |
ttgaatctaccaagtttggatacagattgtatgatatgtctctcagagttcacaaagggtgaaaaattgcgcattttgcctaaatgcaaccatggatttc |
38861485 |
T |
|
| Q |
131 |
atgttcgttgcatcgacaaatggctaaaggcacactcatcatgccctaagtgcagacagtgcctccttgagacttgtcgaaagattg |
217 |
Q |
| |
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||||||||||||| |||||||||||||| | ||| |||||||| || ||||||||||| || || ||||| |||||||||||||||| |
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| T |
38861484 |
atgttcgttgcattgacaaatggctaaaagaacattcatcatgtccaaagtgcagacaatgtcttcttgaaacttgtcgaaagattg |
38861398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 157
Target Start/End: Complemental strand, 43666161 - 43666059
Alignment:
| Q |
55 |
gagtgtgtaatatgtctctcagaattcacaaaaggtgaaaaggtgcgcattttacctaaatgcaatcatggtttccatgttcgttgcatcgacaaatggc |
154 |
Q |
| |
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|||||||| |||||||| || || ||||| || || || || |||||| |||| || || || || ||||| || |||||||||||||| |||||||||| |
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| T |
43666161 |
gagtgtgtgatatgtctgtcggagttcactaacggcgataaagtgcgccttttgccaaagtgtaaccatggatttcatgttcgttgcattgacaaatggc |
43666062 |
T |
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| Q |
155 |
taa |
157 |
Q |
| |
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||| |
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|
| T |
43666061 |
taa |
43666059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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