View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20376_low_19 (Length: 238)
Name: NF20376_low_19
Description: NF20376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20376_low_19 |
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| [»] chr8 (8 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 14 - 238
Target Start/End: Complemental strand, 38827521 - 38827297
Alignment:
| Q |
14 |
atcacacacaagaaggttactcttccaaaatccaattgattatcaatcaccaaccagctcccctgttctcacacacaaccataattcaactaactcatat |
113 |
Q |
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| T |
38827521 |
atcacacacaagaaggttactcttccaaaatccaattgattatcaatcaccaaccagctcccctgttctcacacacaaccataattcaactaactcatat |
38827422 |
T |
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| Q |
114 |
tttggaattcgtgaatttgatgcaaatgttgtgatgatacttgcagttctattgtgtgctcttatttgctcacttgccttaaactcgatcataaggtgcg |
213 |
Q |
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| T |
38827421 |
tttggaattcgtgaatttgatgcaaatgttgtgatgatacttgcagttctattgtgtgctcttatttgctcacttgccttaaactcgatcataaggtgcg |
38827322 |
T |
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| Q |
214 |
ctttaaggttttctaacgtagccct |
238 |
Q |
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| T |
38827321 |
ccttaaggttttctaacgtagccct |
38827297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 38850622 - 38850844
Alignment:
| Q |
14 |
atcacacacaagaaggttactcttccaaaatccaattgattatcaatcaccaaccagctcccctgttctcacacacaaccataattcaactaactcatat |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||| |||| || |||||||| ||||| || |
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| T |
38850622 |
atcacacacaagaaggttactcttccaaaatccaattgattttcaatcaccaaccagctcccctgtgttaacaaacaatcacaattcaacagactcaaat |
38850721 |
T |
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| Q |
114 |
tttggaattcgtgaatttgatgcaaatgttgtgatgatacttgcagttctattgtgtgctcttatttgctcacttgccttaaactcgatcataaggtgcg |
213 |
Q |
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| T |
38850722 |
tttggagctcgtgaatttgattcaaatgttgtgatgatagttgcagtcctattatgtgcttttatttgctcacttgcattaaactccatcataaggtgtg |
38850821 |
T |
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| Q |
214 |
ctttaaggttttctaacgtagcc |
236 |
Q |
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| T |
38850822 |
ccttaagggtttcaaacgtagcc |
38850844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 38865351 - 38865128
Alignment:
| Q |
18 |
cacacaagaaggttactcttccaaaatccaattgattatcaatcaccaaccagctcccctgttctcacacacaa---ccataattcaactaactcatatt |
114 |
Q |
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|||||||||||||||||||| ||| | |||||||| ||||||||| ||| | ||||| |||| | ||| | || |||||||||||| ||||||||| |
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| T |
38865351 |
cacacaagaaggttactctttcaagacccaattgaacatcaatcactaactaactcccatgttttaacaaataataaccataattcaacagactcatatt |
38865252 |
T |
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| Q |
115 |
ttggaattcgtgaatttgatgcaaatgttgtgatgatacttgcagttctattgtgtgctcttatttgctcacttgccttaaactcgatcataaggtgcgc |
214 |
Q |
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| T |
38865251 |
ttggagctcgtgaattcgattcaaatgttataatgatacttgcagttttattgtgtgctcttatttgctcacttgcattaaactccatcataaggtgtgg |
38865152 |
T |
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| Q |
215 |
tttaaggttttctaacgtagccct |
238 |
Q |
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|||||||||||||||||||||||| |
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| T |
38865151 |
tttaaggttttctaacgtagccct |
38865128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 38841302 - 38841084
Alignment:
| Q |
18 |
cacacaagaaggttactcttccaaaatccaattgattatcaatcaccaaccagctcccctgttctcacacacaaccataattcaactaactcatattttg |
117 |
Q |
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|||| ||||||||||||| | ||||| ||| ||||| ||||||||| ||||| ||||||| | | ||| |||||||||||||||| ||||| |||||| |
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| T |
38841302 |
cacataagaaggttactcattcaaaacccagttgatcatcaatcactaaccaactcccctactttaacaaacaaccataattcaacagactcaaattttg |
38841203 |
T |
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| Q |
118 |
gaattcgtgaatttgatgcaaatgttgtgatgatacttgcagttctattgtgtgctcttatttgctcacttgccttaaactcgatcataaggtgcgcttt |
217 |
Q |
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|| ||||||||||||| |||| |||||||||||||||||||| |||| |||| | |||||||||||||||| |||||||| || || ||||| || || |
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| T |
38841202 |
gagatcgtgaatttgattcaaaagttgtgatgatacttgcagtcatattatgtgtttttatttgctcacttgcattaaactccattatcaggtgtgcctt |
38841103 |
T |
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| Q |
218 |
aaggttttctaacgtagcc |
236 |
Q |
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||||||||| ||||||||| |
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| T |
38841102 |
aaggttttcaaacgtagcc |
38841084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 38859037 - 38858841
Alignment:
| Q |
18 |
cacacaagaaggttactcttccaaaatccaattgattatcaatcacc---aaccagctcccctgttctcacacacaaccataattcaactaactcatatt |
114 |
Q |
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|||||||||||||||||| | ||||| ||| ||||| ||||||||| || || | |||||||| |||| ||||| | |||||||| ||||| | | |
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| T |
38859037 |
cacacaagaaggttactcattcaaaacccagttgatcatcaatcacttaaaatcaacccccctgttttcacgaacaacaacaattcaaccgactcaaagt |
38858938 |
T |
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| Q |
115 |
ttggaattcgtgaatttgatgcaaatgttgtgatgatacttgcagttctattgtgtgctcttatttgctcacttgccttaaactcgatcataaggtg |
211 |
Q |
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| ||| ||||||||||||| || |||||||||||||| ||||||||||||| |||||| ||||||| | ||||| |||||||| ||||||||||| |
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| T |
38858937 |
tcggagctcgtgaatttgattcagatgttgtgatgataattgcagttctattatgtgcttttatttgtttacttgtattaaactccatcataaggtg |
38858841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 82 - 199
Target Start/End: Complemental strand, 38847052 - 38846935
Alignment:
| Q |
82 |
tcacacacaaccataattcaactaactcatattttggaattcgtgaatttgatgcaaatgttgtgatgatacttgcagttctattgtgtgctcttatttg |
181 |
Q |
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|||||||||| | |||||||||||||| ||||||||| |||||| ||||| ||||||||||||||||| || | || |||||||||||| ||||||| |
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| T |
38847052 |
tcacacacaataacaattcaactaactcgtattttggagctcgtgagtttgaatcaaatgttgtgatgatagtttctgtcctattgtgtgctattatttg |
38846953 |
T |
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| Q |
182 |
ctcacttgccttaaactc |
199 |
Q |
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|||| |||| |||||||| |
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| T |
38846952 |
ctcaattgcattaaactc |
38846935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 38861920 - 38861726
Alignment:
| Q |
18 |
cacacaagaaggttactcttccaaaatccaattgattatcaatcacc---aaccagctcccctgttctcacacacaaccataattcaactaactcatatt |
114 |
Q |
| |
|
|||||||||||||||||| | ||||| ||| ||||| ||||||||| || || ||||| | || ||||| | | ||| |||||||| ||||||||| |
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| T |
38861920 |
cacacaagaaggttactcattcaaaacccagttgatcatcaatcacttaaaatcaactcccgtattttcacaaatagccacaattcaaccgactcatatt |
38861821 |
T |
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| Q |
115 |
ttggaattcgtgaatttgatgcaaatgttgtgatgatacttgcagttctattgtgtgctcttatttgctcacttgccttaaactcgatcataagg |
209 |
Q |
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|| || || |||||||||| |||||||||||||||||||||||||| |||| |||||| ||||| | | ||||| ||||||| ||||||||| |
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| T |
38861820 |
ttagagctcctgaatttgattcaaatgttgtgatgatacttgcagttgtattatgtgcttttattggtccccttgcattaaactttatcataagg |
38861726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 38847099 - 38847053
Alignment:
| Q |
14 |
atcacacacaagaaggttactcttccaaaatccaattgattatcaat |
60 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||| |||||| |
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| T |
38847099 |
atcacacacaagaaggttactcttccaaaacccagttgatcatcaat |
38847053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 43666401 - 43666319
Alignment:
| Q |
129 |
tttgatgcaaatgttgtgatgatacttgcagttctattgtgtgctcttatttgctcacttgccttaaactcgatcataaggtg |
211 |
Q |
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||||||||||||||||| ||| |||| | || ||||| |||||||||||||| |||||| || ||||| ||||||||||| |
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| T |
43666401 |
tttgatgcaaatgttgttatggtactctctgtcctattatgtgctcttatttgttcactttgtttgaactcaatcataaggtg |
43666319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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