View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20376_low_20 (Length: 234)
Name: NF20376_low_20
Description: NF20376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20376_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 54 - 221
Target Start/End: Complemental strand, 44568844 - 44568677
Alignment:
| Q |
54 |
ttcaattgaaacattttaattatctaaaattttaatttccctagaattttcgacctactccatccaaacacacttctaactaaaattttgtttgggg-tt |
152 |
Q |
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| T |
44568844 |
ttcaattgaaacatttaaattatctaaaattttaatttcc-tagaattttcgacctactccatccaaacacacttctaactaaaattttgtttgggggtt |
44568746 |
T |
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| Q |
153 |
aaggtgtaaaagggggagggctttaagggaaggagagagagaaatataggggattccctcacttatttg |
221 |
Q |
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| T |
44568745 |
aaggtgtaaaaggggtagggctttaagggaaggagagagagaaatataggggattccctcacttatttg |
44568677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 7829694 - 7829742
Alignment:
| Q |
54 |
ttcaattgaaacattttaattatctaaaattttaatttccctagaattt |
102 |
Q |
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| T |
7829694 |
ttcaattaaaacattttaattgtctaaaattttaattttcctagaattt |
7829742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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