View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20376_low_5 (Length: 551)
Name: NF20376_low_5
Description: NF20376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20376_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 13 - 532
Target Start/End: Complemental strand, 43396592 - 43396070
Alignment:
| Q |
13 |
gagatgaaagaaggggaattaatgaagaaacttcaagtggtcaattattggagatgtatctttttaataattttattggtgagatggaattggaagatct |
112 |
Q |
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| T |
43396592 |
gagatgaaagaaggggaattaatgaagaaacttcaagtggtcaattattggagatgtatctttttaataattttattggtgagatggaattggaagatct |
43396493 |
T |
|
| Q |
113 |
tgctccttcccgtgtgatgtcaacaattatatgcacgaccacaacataatgactttagtggtctccgcagctacattgcatctgcatcaactgcatttgt |
212 |
Q |
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| T |
43396492 |
cgctccttcccgtgtgatgtcaacaactatatgcacgaccacaacataatgactttagtggtctccgcagctacattgcatctgcatcaactgcatttgt |
43396393 |
T |
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| Q |
213 |
ctgcaatatcaaagatcgcaacgtaaccacacccctaattttaattcactattatctcccctcacctcctctcaaccaaaaacaaagcattgaaatataa |
312 |
Q |
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| T |
43396392 |
ctgcaatatcaaagatcgcaacgcaaccacacccctaattttaattcactattatctcccctagcctactctcaaccaaaaacaaagcattgaa--ataa |
43396295 |
T |
|
| Q |
313 |
atctctcccctctccttcaattataatctcagctataccaagatattttactc-----tttggcagttcaaaaataacagtatctcactgtgnnnnnnng |
407 |
Q |
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| T |
43396294 |
atctctcccctctccttcaattataatctcagctataccaagatattttactctttaatttggcagttcaaaaataacagtatctcactgagtttttttg |
43396195 |
T |
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| Q |
408 |
ttctgtggtgtccaaattatctgcttatagtttatatagtatgcctaactttttctttaaatttataagcaaactgataagagataaagaggaattaaag |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43396194 |
ttctgtggtgtccaaattatctgcttatagtttatatagtatgcctaactttttctttaaatttataagcaaactgataagagataaagaggaaataaag |
43396095 |
T |
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| Q |
508 |
atggtgtgctcagggagagaagagt |
532 |
Q |
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| T |
43396094 |
atggtgtgctcagggagggaagagt |
43396070 |
T |
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