View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20376_low_6 (Length: 419)
Name: NF20376_low_6
Description: NF20376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20376_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 143 - 402
Target Start/End: Original strand, 17107249 - 17107509
Alignment:
| Q |
143 |
ttcattctatcttaaccaccctcaaccattaaaggaaaaattacgtgtttcctctggtttgtcgactcccaattgtcaagaaaatcaac-gcctgttaaa |
241 |
Q |
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| T |
17107249 |
ttcattctatcttaaccaccctcaaccattaaaggaaaaattacgtgtttcctctggtttgccgactcccagttgtcaagaaaatcaagtgcctgttaaa |
17107348 |
T |
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| Q |
242 |
tatgtttgaatttgttttgcatcgtccttcgacatttgttcatttatcctcttccaaatgcaccataacaccactgcgattttgctctatatcttactct |
341 |
Q |
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| T |
17107349 |
tatgtttgaatttgttttgcatcgtccttcgacatttgttcatttatcctcttccaaatgcaccataacaccactacgattttgctctatatcttactct |
17107448 |
T |
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| Q |
342 |
gcaagttaatgattttcattaaaattacaatcattatcactatccctgaaaaggaatatat |
402 |
Q |
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| T |
17107449 |
gcaagttaatgattttcattaaaattacaatcattatcactatccctgaaaaggaatatat |
17107509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 17107092 - 17107219
Alignment:
| Q |
19 |
aatcttgcaggagtagaaactagtttccatcatattattaatggctctgcttcaacttcaaggttgtcattgatttgcatcggcttccaattatctcatc |
118 |
Q |
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| T |
17107092 |
aatcttgcaggagtagaaactagtttccatcatattattaatggctctgcttcaacttcaaggttgtcattgatttgcatcggcttccaattatctcatc |
17107191 |
T |
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| Q |
119 |
gacctttgcaccgattttgagtttttca |
146 |
Q |
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| T |
17107192 |
gacctttgcaccaattttgtgtttttca |
17107219 |
T |
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