View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20377_high_1 (Length: 511)
Name: NF20377_high_1
Description: NF20377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20377_high_1 |
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| [»] scaffold0581 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 8 - 496
Target Start/End: Complemental strand, 25616672 - 25616184
Alignment:
| Q |
8 |
catcatcaatcataacagatacataaatcctgatgattaactccgatacatggattgttcttaaacatactcttaattaatttcagtatctatttcgatc |
107 |
Q |
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|||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25616672 |
catcatcaatcataacagctacataaatcctgataactaactccgatacatggattgttcttaaacatactcttaattaatttcagtatctatttcaatc |
25616573 |
T |
|
| Q |
108 |
tgagcatatatataacagataacatatatttgttatatcagtctactaaaataacagaaagaggagcaggattttttcttggtatacccttctttgtcac |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25616572 |
tgagcatatatataacagataacatatatttgttatatcagtctactaaaataacagaaagaggagcaggattttttcttggtatacccttctttgtcac |
25616473 |
T |
|
| Q |
208 |
aattgtagctaaagtctctgcccnnnnnnnnctaacgcatactctcgagggatattttctttgtaccatctttgtcttagccacaattgttggtgcagct |
307 |
Q |
| |
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|||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25616472 |
aattgtagctaacgtctctgccttttcttttctaacacatactctcgagggatattttctttgtaccatctttgtcttagccacaattgttggtgcagct |
25616373 |
T |
|
| Q |
308 |
tcttccttttcttcctctacaccagcaggatttcttcttggtctacccctctttctcttggccacaattggggctgcaacagcttcttgctttttcttga |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25616372 |
tcttccttttcttcctctacaccagcaggatttcttcttggtctacccctctttctcttggccacaattggggctgcaacgacttcttgctttttcttga |
25616273 |
T |
|
| Q |
408 |
agcatggtttctctaagccattcttgccataaatttccacattgaataggttttctccaatatatgtgaaaaccaagaactcttcaagt |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25616272 |
agcatggtttctctaagccattcttgccataaatttccacattgaataggttttctccaatatatgtgaagaccaagaactcttcaagt |
25616184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 25611241 - 25611124
Alignment:
| Q |
11 |
catcaatcataacagatacataaatcctgatgattaactccgatacatggattgttcttaaacatactcttaattaatttcagtatctatttcgatctga |
110 |
Q |
| |
|
||||||||||||||| |||||||||||| || | ||||||| ||| |||||||||| |||| |||||| ||||||||| |||||||||||||| |||||| |
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| T |
25611241 |
catcaatcataacagctacataaatcctaataactaactccaatatatggattgttgttaagcatact-ttaattaatctcagtatctatttcaatctga |
25611143 |
T |
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| Q |
111 |
gcatatatataacagataa |
129 |
Q |
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|||||||||||||||||| |
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| T |
25611142 |
tcatatatataacagataa |
25611124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0581 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: scaffold0581
Description:
Target: scaffold0581; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 6243 - 6356
Alignment:
| Q |
8 |
catcatcaatcataacagatacataaatcctgatgattaactccgatacatggattgttcttaaacatactcttaattaatttcagtatctatttcgatc |
107 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6243 |
catcatcaatcataacagctgcataaatcctgataattaactccgatacatggattgttcttaaacatactcttaattaatttcagtatctatttcaatc |
6342 |
T |
|
| Q |
108 |
tgagcatatatata |
121 |
Q |
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|||||||||||||| |
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|
| T |
6343 |
tgagcatatatata |
6356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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