View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20377_high_5 (Length: 345)
Name: NF20377_high_5
Description: NF20377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20377_high_5 |
 | |
|
| [»] scaffold0188 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0188 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 12 - 345
Target Start/End: Original strand, 11300 - 11633
Alignment:
| Q |
12 |
aatattgcatataatatcgtaaatggtatttgcgctcccgtaaaagatgtatcagctccggtatacataaacatcggagatggagggaatattgtaggct |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11300 |
aatattgcatataatatcgtaaatggtatttgcgctcctgtaaaagatctatcagctccggtatacataaacatcggagatggagggaatattgaaggct |
11399 |
T |
|
| Q |
112 |
tggcaaccaagtaagctccatacatgaaactttatgactaatcgactgctcgatattttacttatatttgtcatttttctacaatactctttactatttt |
211 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
11400 |
tggcaaccaagtaagctctatacatgaaactttatgactaatcgactgctcgatatgttacttatatttgtcatttttctacaatactctttactattgt |
11499 |
T |
|
| Q |
212 |
acaaaattgaactttgaaaatgacaaatacatacgaacaataaaagagacagttaaaaaggatcgtagccgcagggtgtacttttctagttacttttcgg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11500 |
acaaaattgaactttgaaaatgacaaatacatacaaacaataaaagagacagttaaaaaggatcgtagccgcagggtgtacttttctagttacttttcgg |
11599 |
T |
|
| Q |
312 |
gagctaagtctgacatgaacatgatttgaattgc |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
11600 |
gagctaagtctgacatgaacatgatttgaattgc |
11633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 13640681 - 13640813
Alignment:
| Q |
16 |
ttgcatataatatcgtaaatggtatttgcgctcccgtaaaagatgtatcagctccggtatacataaacatcggagatggagggaatattgtaggcttggc |
115 |
Q |
| |
|
||||||||||| | ||||||||||||||| |||| |||||||| ||||||||| |||||||||| ||| |||||||||||||| ||| |||||| || |
|
|
| T |
13640681 |
ttgcatataatgttgtaaatggtatttgcactcctataaaagatcaatcagctcctgtatacataaccattggagatggagggaaccttgaaggcttagc |
13640780 |
T |
|
| Q |
116 |
aaccaagtaagctccatacatgaaactttatga |
148 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |
|
|
| T |
13640781 |
aaccaagtaagctttatacatgaaactttatga |
13640813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 50980700 - 50980590
Alignment:
| Q |
11 |
gaatattgcatataatatcgtaaatggtatttgcgctcccgtaaaagatgtatcagctccggtatacataaacatcggagatggagggaatattgtaggc |
110 |
Q |
| |
|
|||||||||||||||| | || |||||||||||| |||| |||||||| ||||||||| |||||||||| ||| |||||||||||||| ||| |||| |
|
|
| T |
50980700 |
gaatattgcatataatgttgtgaatggtatttgcactcctataaaagatcaatcagctcctgtatacataaccattggagatggagggaaccttggaggc |
50980601 |
T |
|
| Q |
111 |
ttggcaaccaa |
121 |
Q |
| |
|
||| |||||| |
|
|
| T |
50980600 |
atggaaaccaa |
50980590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University