View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20377_low_11 (Length: 251)
Name: NF20377_low_11
Description: NF20377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20377_low_11 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 35831783 - 35831543
Alignment:
| Q |
11 |
cagagatcagttttggcagtaacggattatcaccagccagcacagttggcgatgaatcaaagaaatctgagttgccaccccaccaaggtcctgaaaccga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35831783 |
cagagatcagttttggcagtaacggattatcaccagccagcacagttggcgatgaatcaaagaaatctgagttgccaccccaccaaggtcctgaaaccga |
35831684 |
T |
|
| Q |
111 |
tgtttataactttggaatattattgcttgaaatcatttctggaaaactaccgtactctgaagaacaaggtctccttgtgaactgggtaagtttggaatct |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35831683 |
tgtttataactttggaatattattgcttgaaatcatttctggaaaactaccgtactctgaagaacaaggtctccttgtgaactgggtaagtttggaatct |
35831584 |
T |
|
| Q |
211 |
gcaccccttccccctcctttagaactctcctttctaagaat |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35831583 |
gcaccccttccccctcctttagaactctcctttctaagaat |
35831543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University