View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20377_low_12 (Length: 249)
Name: NF20377_low_12
Description: NF20377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20377_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 2271613 - 2271841
Alignment:
| Q |
1 |
atggaataatatggatgcgactcttgatattttgaattataaagtgaaaacaaaaaggtaannnnnnnnaagaagtcaaaatagaataaattaaagctaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
2271613 |
atggaataatatggatgcgactcttgatattttgaattataaagtgaaaacaaaaaggtaattttttttaagaagtcaaaatagaataaattaaaactaa |
2271712 |
T |
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| Q |
101 |
actgcactattcctagcataaggtgtgtcggaaatgagactcaaaaagtcacatcatcagttacaaaagagcataaatcaaagataagagactatgaacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||| ||||||||| |||| |
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| T |
2271713 |
actgcactattcctagcataaggtgtgtcggaaatgaggctcaaaaagtcacatcatcggttacaaaagagcataaaccaaatataagagac---caacc |
2271809 |
T |
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| Q |
201 |
tatgcccatatataacaaacggctaagccatc |
232 |
Q |
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||||||||||||||||||| ||||||| |||| |
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| T |
2271810 |
tatgcccatatataacaaagggctaagtcatc |
2271841 |
T |
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