View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20377_low_13 (Length: 221)
Name: NF20377_low_13
Description: NF20377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20377_low_13 |
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| [»] scaffold0034 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 1327987 - 1328175
Alignment:
| Q |
17 |
gaatatgacaatgtttgcacattgagagttagaatgccaatatcatcagatctaagcaatccaagaaacttcataacaaagattagtcgttacaacaaag |
116 |
Q |
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| T |
1327987 |
gaatatgacaatgtttgcacattgagagttagaatgccaatatcatcagatctaagcaatccaagaaacttcataacaaagattagtcgttacaacaaag |
1328086 |
T |
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| Q |
117 |
tggtaaacatacctaatagcatgacagtgctagatgaactcttacctatatcaatagagatggctaagaggaacttaaaagggatatgg |
205 |
Q |
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| T |
1328087 |
tggtaaacatacctaatagcatgacagtgctagatgaactcttacctatatcaatagagatggctaagaggaacttaaaagggatatgg |
1328175 |
T |
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Target: scaffold0034 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0034
Description:
Target: scaffold0034; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 21440 - 21615
Alignment:
| Q |
17 |
gaatatgacaatgtttgcacattgagagttagaatgccaatatcatcagatctaagcaatccaagaaacttcataacaaagattagtcgttacaacaaag |
116 |
Q |
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| T |
21440 |
gaatatgacaatgtatgcacccttagggttcgtatgccgatttcatctgatctgagcaacccacgcaatttcatcacaaagatttctcgttataacaaag |
21539 |
T |
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| Q |
117 |
tggtaaacatacctaatagcatgacagtgctagatgaactcttacctatatcaatagagatggctaagaggaactt |
192 |
Q |
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| T |
21540 |
ttgtcaacattccaaacagcatgacagtattggatgaacttctacctatttcaatcgagatggcaaagagaaactt |
21615 |
T |
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