View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20377_low_3 (Length: 464)
Name: NF20377_low_3
Description: NF20377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20377_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 35831510 - 35831064
Alignment:
| Q |
1 |
agtaaataaatcttcttcgttaatttcctaggcagctgagcacttgaatgataagcgaaacattggctgtttgatcgatcctacgctcgagtccttcaaa |
100 |
Q |
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| T |
35831510 |
agtaaataaatcttcttcgttaatttcctaggctgctgagcacttgaatgataagcgaaacattggctgtttgatcgatcctacgctcgagtccttcaaa |
35831411 |
T |
|
| Q |
101 |
gacaacgaacttgatgtaatatgtgaggtgataaaagaatgtgatcaatctgatcagaggttaaggccaacaatgaaagaagtaactcacaaattgaggg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35831410 |
gacaacgaacttgatgtaatatgtgaggtgataaaagaatgtgttcaatctgatcagaggttaaggccaacaatgaaagaagtaactcacaaattgaggg |
35831311 |
T |
|
| Q |
201 |
aagtgctttctatatcacctgatcaagaagtaccaagactttctccactctggtgggctgaactcgagatcttgtcggtggaggccacttaggctctctt |
300 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35831310 |
aagtgctttctatatcacctgatcaagcagtaccaagactttctccactctggtgggctgaactcgagatcttgtcggtggaggccacttaggctctctt |
35831211 |
T |
|
| Q |
301 |
acttttatttgtaagtcaaagcctctctctaacatgtgccaggttgacagaatatatagctttgtgatgatactatatgatatttgcaactcaaattctt |
400 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35831210 |
acttttgtttgtaagtcaaagcctctctctaacatgtgccaggttgacaaaatatatagctttgtgatgatactatatgatatttgcaactcaaattctt |
35831111 |
T |
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| Q |
401 |
ttcttctttaattccatttgttcttttgtaagtccatatgattaata |
447 |
Q |
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| T |
35831110 |
ttcttctttaattccatttgttcttttgtaagtccatatgattaata |
35831064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 291
Target Start/End: Original strand, 4974597 - 4974691
Alignment:
| Q |
197 |
agggaagtgctttctatatcacctgatcaagaagtaccaagactttctccactctggtgggctgaactcgagatcttgtcggtggaggccactta |
291 |
Q |
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||||||||| ||| | || ||||||| |||| || |||||||| || ||||| |||||||||||||| ||||| || || |||||||| ||||| |
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| T |
4974597 |
agggaagtgttttgtgtaacacctgagcaagctgttccaagactctcaccactatggtgggctgaacttgagatattatctgtggaggctactta |
4974691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 291
Target Start/End: Original strand, 4992505 - 4992599
Alignment:
| Q |
197 |
agggaagtgctttctatatcacctgatcaagaagtaccaagactttctccactctggtgggctgaactcgagatcttgtcggtggaggccactta |
291 |
Q |
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| T |
4992505 |
agggaagtgttttgtgtaacacctgagcaagctgttccaagactctcaccactatggtgggctgaacttgagatattatctgtggaggctactta |
4992599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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