View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20377_low_7 (Length: 323)
Name: NF20377_low_7
Description: NF20377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20377_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 282
Target Start/End: Original strand, 10671223 - 10671488
Alignment:
| Q |
17 |
aataatagcatcaaaagatgatgatataagatactaactcttatttttaatttgaatgtgtgtgtgcagtatatactagtttcaaagaaaattaagagct |
116 |
Q |
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| T |
10671223 |
aataatagcatcaaaagatgatgatataagatactaactcttatttttaatttgaatgtgtgtgtgcagtatatactagtttcaaagaaaattaagagct |
10671322 |
T |
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| Q |
117 |
aactacagttataccagagtaataaattgccatatagagtaagaaattttgaatctttatacaaatataagccttatccaattgaaagaaggtgcaaata |
216 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
10671323 |
aactaaagttataccagagtaataaattgccatatagagtaagaaattttgaatctttatacaaatataagccttatcaaattgaaagaagctgcaaata |
10671422 |
T |
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| Q |
217 |
agcacaatcaaattgaaagatcaaatacaacgaccaattgaaaaaaaggagaatcacaaataacaa |
282 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
10671423 |
agcacaatcaaattgaaagatcaaatacaaagaccaattgaaagaaaggagaatcacaaataacaa |
10671488 |
T |
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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 34026076 - 34026035
Alignment:
| Q |
17 |
aataatagcatcaaaagatgatgatataagatactaactctt |
58 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34026076 |
aataatagcatcaaaagatgatgaaataagatactaactctt |
34026035 |
T |
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