View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20377_low_8 (Length: 283)

Name: NF20377_low_8
Description: NF20377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20377_low_8
NF20377_low_8
[»] chr2 (13 HSPs)
chr2 (11-283)||(39372480-39372752)
chr2 (47-283)||(39224997-39225230)
chr2 (100-277)||(39204006-39204183)
chr2 (56-283)||(39385895-39386120)
chr2 (105-283)||(39179990-39180168)
chr2 (100-269)||(39163442-39163611)
chr2 (108-279)||(39217740-39217911)
chr2 (138-268)||(39395889-39396019)
chr2 (197-283)||(39379258-39379344)
chr2 (189-265)||(39492767-39492843)
chr2 (206-266)||(2363817-2363877)
chr2 (189-265)||(39131561-39131637)
chr2 (233-265)||(44894806-44894838)
[»] chr5 (1 HSPs)
chr5 (56-269)||(33563675-33563886)
[»] chr6 (1 HSPs)
chr6 (204-268)||(16115546-16115610)


Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 11 - 283
Target Start/End: Complemental strand, 39372752 - 39372480
Alignment:
Q  11 cagagagccatgtactccaaataacttggtacaatggtagtgtactaagttagcaggtttgcattaccccatttctatacatattagtctgttccagtac 110  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39372752 cagagagccatgtactccaaataacttggtacaatggtggtgtactaagttagcaggtttgcattaccccatttctatacatattagtctgttccagtac 39372653  T
Q  111 aaaaactaatggcctttatgtgctttaagctcaagaatgcgatattgaatctccttatcaagcagatctgcagattgcaggttgtgatccaaaatgcact 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39372652 aaaaactaatggcctttatgtgctttaagctcaagaatgcgatattgaatctccttatcaagcagatctgcagattgcaggttgtgatccaaaatgcact 39372553  T
Q  211 gcagaacagttctcagactagcaatttcttgatctctggccttatcctgagttcaagtatatagtaataattt 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39372552 gcagaacagttctcagactagcaatttcttgatctctggccttatcctgagttcaagtatatagtaataattt 39372480  T

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Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 47 - 283
Target Start/End: Complemental strand, 39225230 - 39224997
Alignment:
Q  47 gtagtgtactaagttagcaggtttgcattaccccatttctatacatattagtctgttccagtacaaaaactaatggcctttatgtgctttaagctcaaga 146  Q
    |||||||| ||||||||||||||| ||||||||||||| | |||||  |||  |||| |||  ||||||||||  ||||||||||||||| |||||||||    
T  39225230 gtagtgta-taagttagcaggtttccattaccccatttgtttacat--tagcttgtttcagcccaaaaactaacagcctttatgtgctttgagctcaaga 39225134  T
Q  147 atgcgatattgaatctccttatcaagcagatctgcagattgcaggttg-tgatccaaaatgcactgcagaacagttctcagactagcaatttcttgatct 245  Q
    |||||||| |  |||||||||| ||||||| | |||||||  ||| || ||| || ||||||| ||||||||||| | ||||||||||||||||||||||    
T  39225133 atgcgatagtcgatctccttatgaagcagacccgcagattctaggctgctga-ccgaaatgcattgcagaacagtccccagactagcaatttcttgatct 39225035  T
Q  246 ctggccttatcctgagttcaagtatatagtaataattt 283  Q
    |||||||||||||||||||||||| | ||||| |||||    
T  39225034 ctggccttatcctgagttcaagtacacagtaacaattt 39224997  T

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Target: chr2; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 100 - 277
Target Start/End: Original strand, 39204006 - 39204183
Alignment:
Q  100 tgttccagtacaaaaactaatggcctttatgtgctttaagctcaagaatgcgatattgaatctccttatcaagcagatctgcagattgcaggttgtgatc 199  Q
    ||||||||| ||| ||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||| | | |||||  ||||||  |||    
T  39204006 tgttccagtccaataactaatagcctttatgtgcttttagctcaagaatgcgatattcaatctccttatgaagcagacccgtagattcaaggttgctatc 39204105  T
Q  200 caaaatgcactgcagaacagttctcagactagcaatttcttgatctctggccttatcctgagttcaagtatatagtaa 277  Q
      ||||||| ||||||||||| |  |||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  39204106 agaaatgcattgcagaacagtcccaagactagcaatttcttcatctctggccttatcctgagttcaagtacatagtaa 39204183  T

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Target: chr2; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 56 - 283
Target Start/End: Original strand, 39385895 - 39386120
Alignment:
Q  56 taagttagcaggtttgcattaccccatttctatacatattagtctgttccagtacaaaaactaatggcctttatgtgctttaagctcaagaatgcgatat 155  Q
    |||||||||| |||| ||||||||||||||| | ||| | ||| ||||  ||||||||||||| | ||||||||||||||| ||||||||||||||||||    
T  39385895 taagttagcacgtttccattaccccatttctttgcat-taagt-tgttttagtacaaaaactatttgcctttatgtgcttttagctcaagaatgcgatat 39385992  T
Q  156 tgaatctccttatcaagcagatctgcagattgcaggttgtgatccaaaatgcactgcagaacagttctcagactagcaatttcttgatctctggccttat 255  Q
    | |||||| | |  |||||||||  ||  ||  || |||| |||| ||||||| || |||||||| | ||||||||||||||||||||||||||||||||    
T  39385993 tcaatctcataaagaagcagatcctcaacttctagtttgtaatccgaaatgcattgtagaacagtccccagactagcaatttcttgatctctggccttat 39386092  T
Q  256 cctgagttcaagtatatagtaataattt 283  Q
    |||||||||||||| ||||||| |||||    
T  39386093 cctgagttcaagtacatagtaacaattt 39386120  T

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Target: chr2; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 105 - 283
Target Start/End: Complemental strand, 39180168 - 39179990
Alignment:
Q  105 cagtacaaaaactaatggcctttatgtgctttaagctcaagaatgcgatattgaatctccttatcaagcagatctgcagattgcaggttgtgatccaaaa 204  Q
    |||| ||||||||||| ||||||||||||||| ||||||||||||||||| | ||||||||||| |||  || | | |||||  |||||||  ||  |||    
T  39180168 cagtccaaaaactaattgcctttatgtgcttttagctcaagaatgcgatagtcaatctccttatgaagttgacccgtagattcaaggttgttgtctgaaa 39180069  T
Q  205 tgcactgcagaacagttctcagactagcaatttcttgatctctggccttatcctgagttcaagtatatagtaataattt 283  Q
    |||| || |||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  39180068 tgcattgtagaacagtcccaagactagcaatttcttgatctctggccttatcctgagttcaagtatacagtaacaattt 39179990  T

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Target: chr2; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 100 - 269
Target Start/End: Complemental strand, 39163611 - 39163442
Alignment:
Q  100 tgttccagtacaaaaactaatggcctttatgtgctttaagctcaagaatgcgatattgaatctccttatcaagcagatctgcagattgcaggttgtgatc 199  Q
    ||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||| ||| |||  || ||||||| | | |||||  ||||||   ||    
T  39163611 tgttccagtccaaaaactaatagcctttatgtgcttttagctcaagaatgcgatattcaatatccgcatgaagcagacccgtagattcaaggttgctgtc 39163512  T
Q  200 caaaatgcactgcagaacagttctcagactagcaatttcttgatctctggccttatcctgagttcaagta 269  Q
      ||||||| ||||||||||| |  |||||||||||||||| ||||||||||||||||||||||||||||    
T  39163511 agaaatgcattgcagaacagtcccaagactagcaatttcttcatctctggccttatcctgagttcaagta 39163442  T

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Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 279
Target Start/End: Complemental strand, 39217911 - 39217740
Alignment:
Q  108 tacaaaaactaatggcctttatgtgctttaagctcaagaatgcgatattgaatctccttatcaagcagatctgcagattgcaggttgtgatccaaaatgc 207  Q
    ||||||| ||||| |||||||||| |||| ||||||||||||||||| | ||| |||||   ||||||| |  ||||||  ||||||   ||| |||| |    
T  39217911 tacaaaacctaattgcctttatgtccttttagctcaagaatgcgatagtcaatttcctttataagcagaacctcagattctaggttgcattccgaaatac 39217812  T
Q  208 actgcagaacagttctcagactagcaatttcttgatctctggccttatcctgagttcaagtatatagtaata 279  Q
    || ||||| |||| | || | ||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  39217811 acagcagagcagtccccaaattagcaatttcttgatctctagccttatcctgagttcaagtacatagtaata 39217740  T

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Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 138 - 268
Target Start/End: Original strand, 39395889 - 39396019
Alignment:
Q  138 agctcaagaatgcgatattgaatctccttatcaagcagatctgcagattgcaggttgtgatccaaaatgcactgcagaacagttctcagactagcaattt 237  Q
    ||||||||||| |||||||||||||||||   |||||||||  | ||||  ||  |||  ||  ||||||| || |||||||||| ||||| ||||||||    
T  39395889 agctcaagaatacgatattgaatctccttgcgaagcagatcctctgattctagactgttctctgaaatgcattgtagaacagttcccagacaagcaattt 39395988  T
Q  238 cttgatctctggccttatcctgagttcaagt 268  Q
    |||||||||||||||||||||||||||||||    
T  39395989 cttgatctctggccttatcctgagttcaagt 39396019  T

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Target: chr2; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 197 - 283
Target Start/End: Original strand, 39379258 - 39379344
Alignment:
Q  197 atccaaaatgcactgcagaacagttctcagactagcaatttcttgatctctggccttatcctgagttcaagtatatagtaataattt 283  Q
    |||| ||||||| ||  ||||||||  || ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  39379258 atccgaaatgcattgttgaacagtttccaaactagcaatttcttgatctctagccttatcctgagttcaagtacatagtaataattt 39379344  T

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Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 265
Target Start/End: Original strand, 39492767 - 39492843
Alignment:
Q  189 aggttgtgatccaaaatgcactgcagaacagttctcagactagcaatttcttgatctctggccttatcctgagttca 265  Q
    ||||||| ||| | ||||||||| ||||||| | | |||||||||| |||||||||||||||||| |||||||||||    
T  39492767 aggttgttatctataatgcactgtagaacagctttgagactagcaacttcttgatctctggccttgtcctgagttca 39492843  T

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Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 266
Target Start/End: Complemental strand, 2363877 - 2363817
Alignment:
Q  206 gcactgcagaacagttctcagactagcaatttcttgatctctggccttatcctgagttcaa 266  Q
    |||||| |||||||||| |||||||||||||||||| ||| | |||||||||||| |||||    
T  2363877 gcactgtagaacagttcccagactagcaatttcttggtcttttgccttatcctgatttcaa 2363817  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 265
Target Start/End: Complemental strand, 39131637 - 39131561
Alignment:
Q  189 aggttgtgatccaaaatgcactgcagaacagttctcagactagcaatttcttgatctctggccttatcctgagttca 265  Q
    ||||||| ||| | |||||| || ||||||| | | |||| ||||| |||||||||||||||||| |||||||||||    
T  39131637 aggttgttatctataatgcattgtagaacagctatgagacaagcaacttcttgatctctggccttgtcctgagttca 39131561  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 44894806 - 44894838
Alignment:
Q  233 aatttcttgatctctggccttatcctgagttca 265  Q
    |||||||||||||||||||||||||||| ||||    
T  44894806 aatttcttgatctctggccttatcctgaattca 44894838  T

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Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 56 - 269
Target Start/End: Complemental strand, 33563886 - 33563675
Alignment:
Q  56 taagttagcaggtttgcattaccccatttctatacatattagtctgttccagtacaaaaactaatggcctttatgtgctttaagctcaagaatgcgatat 155  Q
    |||||||||| ||||  |||||||||||||| |||||  |||  ||||||| | ||||||||||| ||||||||||| ||| ||| ||||||||||||      
T  33563886 taagttagcacgtttcgattaccccatttctttacat--taggttgttccactccaaaaactaattgcctttatgtgattttagcacaagaatgcgatgg 33563789  T
Q  156 tgaatctccttatcaagcagatctgcagattgcaggttgtgatccaaaatgcactgcagaacagttctcagactagcaatttcttgatctctggccttat 255  Q
    | ||||||||||| ||||||||| |||||||  ||  |||  ||  ||||||| || | |||||| |  |||||||||||||||||||||||||||||||    
T  33563788 tcaatctccttatgaagcagatccgcagattctagtctgttctctgaaatgcattgtaaaacagtcccgagactagcaatttcttgatctctggccttat 33563689  T
Q  256 cctgagttcaagta 269  Q
    ||||| ||||||||    
T  33563688 cctgaattcaagta 33563675  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 268
Target Start/End: Complemental strand, 16115610 - 16115546
Alignment:
Q  204 atgcactgcagaacagttctcagactagcaatttcttgatctctggccttatcctgagttcaagt 268  Q
    ||||| || |||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||    
T  16115610 atgcattgtagaacagttcccagactagcgatttcttgatctctagccttatcctgagttcaagt 16115546  T

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