View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20377_low_9 (Length: 283)

Name: NF20377_low_9
Description: NF20377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20377_low_9
NF20377_low_9
[»] chr2 (24 HSPs)
chr2 (12-267)||(39372021-39372276)
chr2 (13-81)||(39379530-39379598)
chr2 (13-120)||(39386325-39386432)
chr2 (148-262)||(39386436-39386551)
chr2 (149-267)||(39179553-39179673)
chr2 (13-83)||(39217461-39217531)
chr2 (149-267)||(39224561-39224679)
chr2 (13-85)||(39179713-39179785)
chr2 (13-85)||(39396222-39396294)
chr2 (20-112)||(39224691-39224783)
chr2 (31-75)||(39419841-39419885)
chr2 (188-264)||(39188479-39188557)
chr2 (190-264)||(39419997-39420071)
chr2 (10-83)||(2363546-2363619)
chr2 (27-75)||(39471488-39471537)
chr2 (196-264)||(39452109-39452177)
chr2 (31-83)||(44748567-44748619)
chr2 (48-83)||(44625143-44625178)
chr2 (13-95)||(39125272-39125354)
chr2 (188-234)||(39379675-39379721)
chr2 (188-264)||(39139834-39139908)
chr2 (27-83)||(39139996-39140052)
chr2 (188-264)||(39145001-39145077)
chr2 (51-83)||(39425302-39425334)
[»] chr5 (3 HSPs)
chr5 (188-264)||(33563213-33563289)
chr5 (13-93)||(33563372-33563452)
chr5 (31-72)||(17061239-17061280)
[»] chr6 (1 HSPs)
chr6 (13-85)||(16115260-16115332)
[»] chr4 (1 HSPs)
chr4 (12-79)||(33153120-33153187)


Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 12 - 267
Target Start/End: Complemental strand, 39372276 - 39372021
Alignment:
Q  12 atgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgcaaggtgcaagaaattccacatcaccgtaacttactagaaca 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39372276 atgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgcaaggtgcaagaaattccacatcaccgtaacttactagaaca 39372177  T
Q  112 ggcataaaataagttataaacttcgaattaatgaaggaaaaaattaagcagattgtactgaatatttcnnnnnnnttcaaaccatttataaaatagaaga 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  39372176 ggcataaaataagttataaacttcgaattaatgaaggaaaaaattaagcagattgtactgaatatttcaaaaaaattcaaaccatttataaaatagaaga 39372077  T
Q  212 gatacataaaaggagagataaatttcaagtctgcttcactttccaagcattaaaac 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39372076 gatacataaaaggagagataaatttcaagtctgcttcactttccaagcattaaaac 39372021  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 39379530 - 39379598
Alignment:
Q  13 tgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgcaaggtgcaaga 81  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  39379530 tgaatctaacagctacaacaaattgcttcctcttgataagattctcaacaaaatctgcaaggtgcaaga 39379598  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 39386325 - 39386432
Alignment:
Q  13 tgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgcaaggtgcaagaaattccacatcaccgtaacttactagaacag 112  Q
    |||||||||||||| ||||||||||||||||| | ||||||| || ||||||||||| ||| ||||||||||| ||| ||| | ||||||| |||||||     
T  39386325 tgaatctaacagcttcaacaaattgcttcctcttgataagatgcttaacaaaatctggaagatgcaagaaatttcacttcatcataacttattagaacat 39386424  T
Q  113 gcataaaa 120  Q
     |||||||    
T  39386425 acataaaa 39386432  T

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Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 148 - 262
Target Start/End: Original strand, 39386436 - 39386551
Alignment:
Q  148 gaaaaaattaagcagattgtactgaatatttcnnnnnnnttcaaaccatttataaaatagaagagatacataaaaggagagataaatttc-aagtctgct 246  Q
    ||||||| ||||||||||| ||||||||||||        |||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||  |    
T  39386436 gaaaaaactaagcagattgaactgaatatttcaaaatttgtcaaaccatttagaaactagaagagatacataaaaggagagataaatttcgaagtctaat 39386535  T
Q  247 tcactttccaagcatt 262  Q
    ||| |||| |||||||    
T  39386536 tcattttcaaagcatt 39386551  T

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Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 267
Target Start/End: Complemental strand, 39179673 - 39179553
Alignment:
Q  149 aaaaaattaagcagattgtactgaatatttcnnnnnnnttcaaaccatttataaaatagaagagatacataaaa--ggagagataaatttcaagtctgct 246  Q
    |||||| ||||||||||| |||||| |||||        |||||||||||| ||||||||||||||||||||||   ||||||||||||||||||||  |    
T  39179673 aaaaaactaagcagattgaactgaacatttcacaatttatcaaaccatttagaaaatagaagagatacataaaaagagagagataaatttcaagtctaat 39179574  T
Q  247 tcactttccaagcattaaaac 267  Q
    ||| |||| ||||||||||||    
T  39179573 tcattttcaaagcattaaaac 39179553  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 39217531 - 39217461
Alignment:
Q  13 tgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgcaaggtgcaagaaa 83  Q
    |||||||||||||| |||||||||| ||  ||||||||||||||| ||||||| |||||||||||||||||    
T  39217531 tgaatctaacagctccaacaaattgttttttcctaataagattcttaacaaaacctgcaaggtgcaagaaa 39217461  T

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Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 149 - 267
Target Start/End: Complemental strand, 39224679 - 39224561
Alignment:
Q  149 aaaaaattaagcagattgtactgaatatttcnnnnnnnttcaaaccatttataaaatagaagagatacataaaaggagagataaatttcaagtctgcttc 248  Q
    ||||||||||||||| || ||||||||||||        |||||||||||| ||||||| | |||||||  ||| |||||||||||||||| |||| |||    
T  39224679 aaaaaattaagcagaatgaactgaatatttcaaattttgtcaaaccatttagaaaatagtatagatacaagaaaagagagataaatttcaattctgtttc 39224580  T
Q  249 actttccaagcattaaaac 267  Q
    | |||| ||||||||||||    
T  39224579 attttcaaagcattaaaac 39224561  T

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Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 39179785 - 39179713
Alignment:
Q  13 tgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgcaaggtgcaagaaatt 85  Q
    |||||||||||||| |||||| |||||||||  | ||||||| || ||||||||||||||| |||||||||||    
T  39179785 tgaatctaacagctgcaacaatttgcttcctgttgataagatgcttaacaaaatctgcaagatgcaagaaatt 39179713  T

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Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 39396222 - 39396294
Alignment:
Q  13 tgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgcaaggtgcaagaaatt 85  Q
    |||||||||||||||||||||| ||||| ||||| |||||||| | |||||||||||| |||  |||||||||    
T  39396222 tgaatctaacagctacaacaaactgctttctcctgataagatttttaacaaaatctgcgaggaacaagaaatt 39396294  T

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Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 39224783 - 39224691
Alignment:
Q  20 aacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgcaaggtgcaagaaattccacatcaccgtaacttactagaacag 112  Q
    ||||||| |||||| |||||||||| | ||||||  || ||||||||||||||| ||||||||||| ||| ||| |  ||||||||| |||||    
T  39224783 aacagcttcaacaatttgcttcctcatgataagacgcttaacaaaatctgcaagatgcaagaaatttcacttcatcaaaacttactacaacag 39224691  T

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Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 39419841 - 39419885
Alignment:
Q  31 caaattgcttcctcctaataagattctcaacaaaatctgcaaggt 75  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||    
T  39419841 caaattgcttcctccttataagattctcaacaaaatctgcgaggt 39419885  T

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Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 264
Target Start/End: Original strand, 39188479 - 39188557
Alignment:
Q  188 tcaaaccatttataaaatagaagagatacata--aaaggagagataaatttcaagtctgcttcactttccaagcattaa 264  Q
    |||||||||||  ||||||||||| |||||||  ||| ||||||||||||| |||||| ||||| |||| |||||||||    
T  39188479 tcaaaccatttgaaaaatagaagaaatacatataaaaagagagataaatttgaagtctacttcaatttcgaagcattaa 39188557  T

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Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 264
Target Start/End: Original strand, 39419997 - 39420071
Alignment:
Q  190 aaaccatttataaaatagaagagatacataaaaggagagataaatttcaagtctgcttcactttccaagcattaa 264  Q
    |||||||||| ||||| |||||||| | ||||| |||||||||||||||||| |  |||| ||| ||||||||||    
T  39419997 aaaccatttagaaaatggaagagatgcgtaaaaagagagataaatttcaagtatatttcattttacaagcattaa 39420071  T

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Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 83
Target Start/End: Complemental strand, 2363619 - 2363546
Alignment:
Q  10 agatgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgcaaggtgcaagaaa 83  Q
    ||||||||||||||||  ||| | |||||| | || | |||||||||| |||||||||||||||||||| ||||    
T  2363619 agatgaatctaacagcctcaatatattgctgcttcatgataagattctgaacaaaatctgcaaggtgcaggaaa 2363546  T

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Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 39471488 - 39471537
Alignment:
Q  27 acaacaaattgcttcctcctaataag-attctcaacaaaatctgcaaggt 75  Q
    ||||||||||||||| ||||||||||  ||||||||||||||||||||||    
T  39471488 acaacaaattgcttcttcctaataagttttctcaacaaaatctgcaaggt 39471537  T

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Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 264
Target Start/End: Complemental strand, 39452177 - 39452109
Alignment:
Q  196 tttataaaatagaagagatacataaaaggagagataaatttcaagtctgcttcactttccaagcattaa 264  Q
    |||| ||||| |||||||| ||||||| |||||||| ||||||||||   |||| ||||||||||||||    
T  39452177 tttagaaaatggaagagatgcataaaaagagagatacatttcaagtcaatttcattttccaagcattaa 39452109  T

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Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 44748619 - 44748567
Alignment:
Q  31 caaattgcttcctcctaataagattctcaacaaaatctgcaaggtgcaagaaa 83  Q
    |||||| |||| || | ||||||||||||||||||||||||||||| ||||||    
T  44748619 caaatttcttcatcttgataagattctcaacaaaatctgcaaggtgtaagaaa 44748567  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 83
Target Start/End: Complemental strand, 44625178 - 44625143
Alignment:
Q  48 ataagattctcaacaaaatctgcaaggtgcaagaaa 83  Q
    ||||||||||||||||||||||||||||| ||||||    
T  44625178 ataagattctcaacaaaatctgcaaggtgtaagaaa 44625143  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 39125354 - 39125272
Alignment:
Q  13 tgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgcaaggtgcaagaaattccacatcacc 95  Q
    |||||||||||||| || || ||||||  ||| | ||||||||||| |||||| |||||||||  |||||||| ||| |||||    
T  39125354 tgaatctaacagcttcatcatattgctgtctcttgataagattctcgacaaaaactgcaaggtttaagaaatttcacttcacc 39125272  T

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Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 39379675 - 39379721
Alignment:
Q  188 tcaaaccatttataaaatagaagagatacataaaaggagagataaat 234  Q
    |||||||||||| ||||||||| |||||||||||  |||||||||||    
T  39379675 tcaaaccatttagaaaatagaaaagatacataaatagagagataaat 39379721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 264
Target Start/End: Complemental strand, 39139908 - 39139834
Alignment:
Q  188 tcaaaccatttataaaatagaagagatacataaaaggagagataaatttcaagtctgcttcactttccaagcattaa 264  Q
    ||||||||||||||| || |||||||||||| ||  ||||||| ||||| ||||||  |||| |||||| |||||||    
T  39139908 tcaaaccatttataacatggaagagatacatgaa--gagagatgaatttgaagtctatttcattttccacgcattaa 39139834  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 39140052 - 39139996
Alignment:
Q  27 acaacaaattgcttcctcctaataagattctcaacaaaatctgcaaggtgcaagaaa 83  Q
    ||||||||||||||| |||| |||||||  |||||||| |||| ||||| |||||||    
T  39140052 acaacaaattgcttcttcctgataagatcttcaacaaattctgtaaggtacaagaaa 39139996  T

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Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 264
Target Start/End: Complemental strand, 39145077 - 39145001
Alignment:
Q  188 tcaaaccatttataaaatagaagagatacataaaaggagagataaatttcaagtctgcttcactttccaagcattaa 264  Q
    |||||||||||  ||||||||||| ||||||| ||  ||||||| |||| ||| || ||||| |||| |||||||||    
T  39145077 tcaaaccatttgaaaaatagaagaaatacatataaaaagagatatatttgaagcctacttcaatttcaaagcattaa 39145001  T

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Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 39425302 - 39425334
Alignment:
Q  51 agattctcaacaaaatctgcaaggtgcaagaaa 83  Q
    ||||| |||||||||||||||||||||||||||    
T  39425302 agattatcaacaaaatctgcaaggtgcaagaaa 39425334  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 188 - 264
Target Start/End: Complemental strand, 33563289 - 33563213
Alignment:
Q  188 tcaaaccatttataaaatagaagagatacataaaaggagagataaatttcaagtctgcttcactttccaagcattaa 264  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||  |||| |||| |||||||||    
T  33563289 tcaaaccatttagaaaatagaagagatacataaaatgagagataaatttcaagtctatttcattttcaaagcattaa 33563213  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 33563452 - 33563372
Alignment:
Q  13 tgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgcaaggtgcaagaaattccacatca 93  Q
    |||||||||||||| |||||| |||||||||  | ||||||| || ||||||||||||||| ||||||||||| ||| |||    
T  33563452 tgaatctaacagctgcaacaatttgcttcctgttgataagatgcttaacaaaatctgcaagatgcaagaaatttcacttca 33563372  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 17061280 - 17061239
Alignment:
Q  31 caaattgcttcctcctaataagattctcaacaaaatctgcaa 72  Q
    |||||| ||||||| | |||||||||||||||||||||||||    
T  17061280 caaattccttcctcttgataagattctcaacaaaatctgcaa 17061239  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 16115332 - 16115260
Alignment:
Q  13 tgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgcaaggtgcaagaaatt 85  Q
    |||||||||||||| ||||||||||||| ||||| |||||||  | ||||||||||||||||| |||||||||    
T  16115332 tgaatctaacagcttcaacaaattgctttctcctgataagatatttaacaaaatctgcaaggtacaagaaatt 16115260  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 33153187 - 33153120
Alignment:
Q  12 atgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgcaaggtgcaa 79  Q
    ||||||||||||||| ||| |  ||||||| |||  |||||||||| ||||||||||||||| |||||    
T  33153187 atgaatctaacagcttcaatatgttgcttcttccggataagattctgaacaaaatctgcaagttgcaa 33153120  T

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