View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20378_high_12 (Length: 331)
Name: NF20378_high_12
Description: NF20378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20378_high_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 10 - 331
Target Start/End: Original strand, 28988029 - 28988347
Alignment:
| Q |
10 |
tcataggtagtgagttgttactagtaagttctgaagcacggacacctcttagattaggtgtttcctgtatccaaaacgcaccggtgtctgacactgacac |
109 |
Q |
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| T |
28988029 |
tcataggtagtgagttgttactagtaagttctgaagcacggacacctcttagattaggtgtttcctgtgtccaaaacgcaccggtgtctgacactgacac |
28988128 |
T |
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| Q |
110 |
aacacctacacataaatcacctgtgtcgacgtgtccgtgtcagtgtcgtgtcggtgtctgcttcgtagctagtaaagtctaagttagaattttggagctt |
209 |
Q |
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| T |
28988129 |
aacacctacacataaatcacctgtgtcgacgtatccgtgtcagtgtcgtgtcggtgtctgcttcgtagctagtaaagtataagttagaattttggagctt |
28988228 |
T |
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| Q |
210 |
taaataattgtagtgtggtgggggaaaaataccttttcttctttcttttctctgaggttgtgtacattgattatgttaatgatgcttccgggttctgatt |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
28988229 |
taaataattgtagtgtggtgggggaaaaataccttttcttctttcttttctctgaggttgtgtac---gattatgttaatgatgcttctgggttctgatt |
28988325 |
T |
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| Q |
310 |
ttgagccctgttattttgtggc |
331 |
Q |
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| T |
28988326 |
ttgagccctgttattttgtggc |
28988347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 167
Target Start/End: Original strand, 26915295 - 26915330
Alignment:
| Q |
132 |
gtgtcgacgtgtccgtgtcagtgtcgtgtcggtgtc |
167 |
Q |
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| T |
26915295 |
gtgtcgacgtgtccgtgtcagtgtcgtttcggtgtc |
26915330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 161
Target Start/End: Original strand, 45216156 - 45216185
Alignment:
| Q |
132 |
gtgtcgacgtgtccgtgtcagtgtcgtgtc |
161 |
Q |
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| T |
45216156 |
gtgtcgacgtgtccgtgtcagtgtcgtgtc |
45216185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 161
Target Start/End: Complemental strand, 9929552 - 9929523
Alignment:
| Q |
132 |
gtgtcgacgtgtccgtgtcagtgtcgtgtc |
161 |
Q |
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| T |
9929552 |
gtgtcgacgtgtccgtgtcagtgtcgtgtc |
9929523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 161
Target Start/End: Original strand, 32201064 - 32201093
Alignment:
| Q |
132 |
gtgtcgacgtgtccgtgtcagtgtcgtgtc |
161 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
32201064 |
gtgtcgacgtgtccgtgtcagtgtcgtgtc |
32201093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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