View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20378_high_15 (Length: 326)
Name: NF20378_high_15
Description: NF20378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20378_high_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 22996457 - 22996565
Alignment:
| Q |
20 |
aataagttatttggatttattcattattaataacttacacatcaacagttagctctatttcattttaacgagacggtttgaatcttagaccagctgcatt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
22996457 |
aataagttatttggatttattcattattaataacttaca--tcaatagatagctctatttcattttaacgagacggtttgaatcttagatcagctgcatt |
22996554 |
T |
|
| Q |
120 |
acataatatgt |
130 |
Q |
| |
|
|||| |||||| |
|
|
| T |
22996555 |
acatgatatgt |
22996565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 198 - 273
Target Start/End: Complemental strand, 37559178 - 37559103
Alignment:
| Q |
198 |
tattcaacatataaatcagaaacatcaatgcatagtttgtccatggcgtgtggaatttcaagtttgtattatatac |
273 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37559178 |
tattcaacatataaatcagaaacatgcatgcatagtttgtccatggcgtgtggaatctcaagtttgtattatatac |
37559103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 314
Target Start/End: Original strand, 21359502 - 21359600
Alignment:
| Q |
217 |
aaacatcaatgcatagtttgtccatggcgtgtggaatttcaagtttgtattatatacctgatgctttt-tgcaggtagtgaagacaagattgcaacagc |
314 |
Q |
| |
|
||||||| ||||||||||||||| |||| |||||||| |||| ||||||||||||||| || |||| ||||||| ||||||| ||||||||| |||| |
|
|
| T |
21359502 |
aaacatccatgcatagtttgtccttggcatgtggaatcccaagcttgtattatataccttgtgtttttctgcaggtggtgaagataagattgcagcagc |
21359600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University