View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20378_high_16 (Length: 319)
Name: NF20378_high_16
Description: NF20378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20378_high_16 |
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| [»] chr4 (7 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 49 - 319
Target Start/End: Complemental strand, 38224828 - 38224551
Alignment:
| Q |
49 |
aactattccctgaggaacaaaatgcgagcggcatcgcttccgatgagattaacaagaccaacaggggaaaactcgtgaagaagaagatcaatatcagaag |
148 |
Q |
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| T |
38224828 |
aactattccctgaggaacaaaatgcaagcggcatcgcttccgacgagattaacaagaccaacaggggaaaactcgtgaagaggaagatcaatatcagaag |
38224729 |
T |
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| Q |
149 |
aagctctaagctttgccatgaagtatg-------atttttctctctaagagtgtgagaaaccgttacgctggtatggtgaagcaattgctttatgtcttg |
241 |
Q |
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||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38224728 |
aagctctaagctttgccattaagtctgcacactgatttttctctctaagagtgtgagaaaccgttacgctggtatggtgaagcaattgctttatgtcttt |
38224629 |
T |
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| Q |
242 |
gatgagaacaacatagatgtgataacactcaatgggaccatttataaggttaacgcaaacaagataattagagtagca |
319 |
Q |
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| T |
38224628 |
gatgagaacaacatagatgtgataacactcaatggggccatttataagattaacgcaaacaagataatcagagtagca |
38224551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 319
Target Start/End: Complemental strand, 38945861 - 38945743
Alignment:
| Q |
201 |
accgttacgctggtatggtgaagcaattgctttatgtcttggatgagaacaacatagatgtgataacactcaatgggaccatttataaggttaacgcaaa |
300 |
Q |
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| T |
38945861 |
accgttacgttgttatggtgaagcaattgctttatgtcttggatgaaaacaacatagatatggtacgtctcaatcgggtcatttataagattaatgcaaa |
38945762 |
T |
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| Q |
301 |
caagataattagagtagca |
319 |
Q |
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| T |
38945761 |
caagagaatccgagtagca |
38945743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 319
Target Start/End: Original strand, 10470105 - 10470242
Alignment:
| Q |
182 |
ctctctaagagtgtgagaaaccgttacgctggtatggtgaagcaattgctttatgtcttggatgagaacaacatagatgtgataacactcaatgggacca |
281 |
Q |
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| T |
10470105 |
ctctctaagagtgtgagaaaccgttggattggtttgttgaagcatttgttttatctcttggatgagaaccacatagatatggtatctcacgatgggacca |
10470204 |
T |
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| Q |
282 |
tttataaggttaacgcaaacaagataattagagtagca |
319 |
Q |
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| T |
10470205 |
ttaataaggttgacgcaagcaagagaatcagaatagca |
10470242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 319
Target Start/End: Original strand, 5203964 - 5204101
Alignment:
| Q |
182 |
ctctctaagagtgtgagaaaccgttacgctggtatggtgaagcaattgctttatgtcttggatgagaacaacatagatgtgataacactcaatgggacca |
281 |
Q |
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||||||||||||||||||||||||||| || | || ||||||| ||| ||||||||||| |||| |||| ||||||| || | | ||||||||| ||| |
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| T |
5203964 |
ctctctaagagtgtgagaaaccgttacattgatttgttgaagcatttgttttatgtcttgtatgataacagcatagatatggaacctctcaatggggcca |
5204063 |
T |
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| Q |
282 |
tttataaggttaacgcaaacaagataattagagtagca |
319 |
Q |
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| T |
5204064 |
tatataaggttgatgcaagcaagagaatcagaatagca |
5204101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 292
Target Start/End: Original strand, 10484032 - 10484141
Alignment:
| Q |
183 |
tctctaagagtgtgagaaaccgttacgctggtatggtgaagcaattgctttatgtcttggatgagaacaacatagatgtgataacactcaatgggaccat |
282 |
Q |
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| T |
10484032 |
tctctaagagtgtgagaaattgttgcattgatttgttgaagcattggttttatctcttggatgagaacaacagagatatggtatctctcaatgggaccat |
10484131 |
T |
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| Q |
283 |
ttataaggtt |
292 |
Q |
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| T |
10484132 |
taataaggtt |
10484141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 46762948 - 46762898
Alignment:
| Q |
112 |
ggggaaaactcgtgaagaagaagatcaatatcagaagaagctctaagcttt |
162 |
Q |
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| T |
46762948 |
ggggaaaaatcatgaagaagaagctcaatatcagaagcagctctaagcttt |
46762898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 51302999 - 51303068
Alignment:
| Q |
187 |
taagagtgtgagaaaccgttacgctggtatggtgaagcaattgctttatgtcttggatgagaacaacata |
256 |
Q |
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| T |
51302999 |
taagagtgtgagaaaccgttacattgagttgatgaagcatttgttttatgtcttgtatgataacaacata |
51303068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 174 - 319
Target Start/End: Original strand, 1928859 - 1929004
Alignment:
| Q |
174 |
tgatttttctctctaagagtgtgagaaaccgttacgctggtatggtgaagcaattgctttatgtcttggatgagaacaacatagatgtgataacactcaa |
273 |
Q |
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|||||| ||||||||||||||||||||| ||||||| || ||||||||| ||||| |||||||| |||||||||||||||||||||| | || | ||||| |
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| T |
1928859 |
tgatttctctctctaagagtgtgagaaatcgttacgttgttatggtgaaacaattactttatgttttggatgagaacaacatagatgaggtacctctcaa |
1928958 |
T |
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| Q |
274 |
tgggaccatttataaggttaacgcaaacaagataattagagtagca |
319 |
Q |
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| T |
1928959 |
tagggtcatttataagattaatgcaaacaagagaatcagagtagca |
1929004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 181 - 319
Target Start/End: Original strand, 35060931 - 35061069
Alignment:
| Q |
181 |
tctctctaagagtgtgagaaaccgttacgctggtatggtgaagcaattgctttatgtcttggatgagaacaacatagatgtgataacactcaatgggacc |
280 |
Q |
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|||||||||||||||||||||| ||||| |||| || ||||||| ||| |||||||||||||||||||||| ||||| || || | ||||||||||| |
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| T |
35060931 |
tctctctaagagtgtgagaaactgttacattggtttgttgaagcatttgttttatgtcttggatgagaacaatgtagatatggtacctttcaatgggacc |
35061030 |
T |
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| Q |
281 |
atttataaggttaacgcaaacaagataattagagtagca |
319 |
Q |
| |
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||| |||||||| | |||| ||||| ||| ||| ||||| |
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| T |
35061031 |
attaataaggttgatgcaagcaagagaatcagaatagca |
35061069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 29339792 - 29339730
Alignment:
| Q |
182 |
ctctctaagagtgtgagaaaccgttacgctggtatggtgaagcaattgctttatgtcttggat |
244 |
Q |
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||||||||||| |||||||||||| || || | ||||| |||||||| |||||||||||||| |
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| T |
29339792 |
ctctctaagagcgtgagaaaccgtcacattgatttggtggagcaattgttttatgtcttggat |
29339730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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