View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20378_high_18 (Length: 311)
Name: NF20378_high_18
Description: NF20378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20378_high_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 38753950 - 38754243
Alignment:
| Q |
18 |
tgcaaagtttgatcaacacgtttgatagtccgaagtccagctgatgagcttgcagattgcaccatttgtccaagtgcataggttcttgaatagacataaa |
117 |
Q |
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| T |
38753950 |
tgcaaagtttgatcaacacgtttgatagtccgaagtccagctgatgagcttgcagattgcaccatttgtccaagtgcataggttcttgaatagacataaa |
38754049 |
T |
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| Q |
118 |
gctgaaatgcatctcactatcagattaagttgtgacgtgtagataattagacatccaacaaatgcttgaaaattgtgtttcacaagggaaaagaaaaagt |
217 |
Q |
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| T |
38754050 |
gctgaaatgcatctcactatcagattatgttgtgacgtgtagataattagacatccaacaaatgcttgaaaattgtgtttcacaagggaaaagaaaaagt |
38754149 |
T |
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| Q |
218 |
tatttcagtgatttcgttcgatgtaagtctcaagtcctctacagtcaaattttcataaacttgatcaagaaaatccttgttattctatatttct |
311 |
Q |
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| T |
38754150 |
tatttcagtgatttcgttcgatgtaagtctcaagtcctctacagtcaaattttcataaacttgatcaagaaaatccttgttattctatatttct |
38754243 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 45016426 - 45016551
Alignment:
| Q |
17 |
ttgcaaagtttgatcaacacgtttgatagtccgaagtccagctgatgagcttgcagattgcaccatttgtccaagtgcataggttcttgaatagacataa |
116 |
Q |
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|||||| ||||| ||||| |||||||||||||||| |||||| | || | ||| || |||||||||||| | |||||||| || || |||| ||| | |
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| T |
45016426 |
ttgcaatgtttgctcaacccgtttgatagtccgaactccagcagttgcgtttgaagcttgcaccatttgctcgagtgcatatgtcctcaaatatacacga |
45016525 |
T |
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| Q |
117 |
agctgaaatgcatctcactatcagat |
142 |
Q |
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| T |
45016526 |
agctgaaacatttctcactatcagat |
45016551 |
T |
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