View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20378_high_19 (Length: 311)
Name: NF20378_high_19
Description: NF20378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20378_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 2454362 - 2454528
Alignment:
| Q |
1 |
tcaaacatatattaacttttgtacatatttaacctcgggnnnnnnncatcaaaaagagaaatcgttacaacaacttctcgataaaattaaactacaatct |
100 |
Q |
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| T |
2454362 |
tcaaacatatattaacttttgtacatatttaacctcgggttattttcatcaaaaagagaaatcgttacaacaacttctcgataaaattaaactacaatct |
2454461 |
T |
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| Q |
101 |
tactgaggactgaaagcgaaacacattaattttacttttaactatcatctatggtggcttgatcctt |
167 |
Q |
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| T |
2454462 |
tactgatggttgaaagcgaaacacattaattttgcttttaactatcatctatggtggcttgatcctt |
2454528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 195 - 305
Target Start/End: Original strand, 2454535 - 2454645
Alignment:
| Q |
195 |
gggttgttttgacctcnnnnnnnctcgtctttattgcatgttgttgtaatttgactttttcatcctagnnnnnnncgtcaccctttgtatttaaactacg |
294 |
Q |
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| T |
2454535 |
gggttgttttgacctctttttttctcgtctttattgcatgttgttttaatttgactttttcatcctagtttttttcgtcaccctttgtatttaaactacg |
2454634 |
T |
|
| Q |
295 |
agtataatcta |
305 |
Q |
| |
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| T |
2454635 |
agtataatcta |
2454645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 51 - 173
Target Start/End: Original strand, 11274704 - 11274826
Alignment:
| Q |
51 |
aaaaagagaaatcgttacaacaacttctcgataaaattaaactacaatcttactgaggactgaaagcgaaacacattaattttacttttaactatcatct |
150 |
Q |
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| T |
11274704 |
aaaaagaggaatcattacatcaactttgcgacaaaattaaactacaatattattagtgaccgaaagcggaacagattaattttacttttaattatcattt |
11274803 |
T |
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| Q |
151 |
atggtggcttgatcctttaactt |
173 |
Q |
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|| ||| |||||| ||||||||| |
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| T |
11274804 |
attgtgacttgatgctttaactt |
11274826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 60 - 191
Target Start/End: Original strand, 46760463 - 46760598
Alignment:
| Q |
60 |
aatcgttacaacaacttctcgataaaattaa---acta-caatcttactgaggactgaaagcgaaacacattaattttacttttaactatcatctatggt |
155 |
Q |
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|||| ||||||||||||||||| |||||||| || | |||||||| ||| | |||||||||| | |||||||||||||||| |||||||| |||||| |
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| T |
46760463 |
aatcattacaacaacttctcgacaaaattaaggcacaatcaatcttattgatggttgaaagcgaagcgcattaattttacttttgactatcatatatggt |
46760562 |
T |
|
| Q |
156 |
ggcttgatcctttaacttatttgagaatcaccttat |
191 |
Q |
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| T |
46760563 |
ggtttaatcctttaacttatttggaaatcaccttat |
46760598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 156
Target Start/End: Complemental strand, 24448206 - 24448161
Alignment:
| Q |
111 |
tgaaagcgaaacacattaattttacttttaactatcatctatggtg |
156 |
Q |
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|
| T |
24448206 |
tgaaagcgaaacacatcaattttacttttaactatcacatatggtg |
24448161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 169
Target Start/End: Original strand, 42689350 - 42689451
Alignment:
| Q |
68 |
caacaacttctcgataaaattaaactacaatcttactgaggactgaaagcgaaacacattaattttacttttaactatcatctatggtggcttgatcctt |
167 |
Q |
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||||||||||| || |||||||| || |||||||||| | ||||||||| ||| | ||||||||| ||||| |||||| | ||||||||| |||||| |
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| T |
42689350 |
caacaacttcttgacaaaattaagcttcaatcttactaatgactgaaagtgaataaaattaattttgtttttacctatcacttgtggtggcttaatcctt |
42689449 |
T |
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| Q |
168 |
ta |
169 |
Q |
| |
|
|| |
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|
| T |
42689450 |
ta |
42689451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 39507343 - 39507303
Alignment:
| Q |
60 |
aatcgttacaacaacttctcgataaaattaaactacaatct |
100 |
Q |
| |
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||||||||| ||||||||| || |||||||||||||||||| |
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| T |
39507343 |
aatcgttaccacaacttcttgacaaaattaaactacaatct |
39507303 |
T |
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