View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20378_high_3 (Length: 374)
Name: NF20378_high_3
Description: NF20378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20378_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 65 - 345
Target Start/End: Complemental strand, 10663730 - 10663450
Alignment:
| Q |
65 |
agaaagagtggacttatatcttaattatgaattgttcaaatgaaaatattggacttaataatgaacatctaaccacttatgataatgacttaattaatac |
164 |
Q |
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| T |
10663730 |
agaaagagtggacttatatcttaattatgaattgttcaaatgaaattattggacttaataatgaacatctaaccacttatgataatgacttaattaatat |
10663631 |
T |
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| Q |
165 |
tctgagtaatttggatactcatgcatgtcagaagtatggtgaataaactatttttagtttaacaataaacataatgcggatttggccaaatgaagatgga |
264 |
Q |
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| T |
10663630 |
tctgagtaatttggatactcatgcatgtcagaagtatggtgaataaactatttttagtttaacaataaacataatgcggttttggccaaatgaagatgga |
10663531 |
T |
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| Q |
265 |
tattgacttagactccattacttcattatacacacaaaggnnnnnnnctcagaaaaacatatatacaaacaggataatatt |
345 |
Q |
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| T |
10663530 |
tattgacttagactccattacttcattatacacacaaaggaaaaaaactcagaaaaacatatatacaaacagcataatatt |
10663450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 10663773 - 10663718
Alignment:
| Q |
1 |
caaaatcaatcaatcaccttttggcatatacaagaagatgattagaaagagtggac |
56 |
Q |
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| T |
10663773 |
caaactcaatcaatcaccttttggcatttacaagaagatgattagaaagagtggac |
10663718 |
T |
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