View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20378_low_1 (Length: 514)

Name: NF20378_low_1
Description: NF20378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20378_low_1
NF20378_low_1
[»] chr4 (13 HSPs)
chr4 (163-508)||(38224432-38224784)
chr4 (1-166)||(38224226-38224391)
chr4 (163-400)||(38945624-38945861)
chr4 (243-419)||(10470105-10470281)
chr4 (83-166)||(38945499-38945582)
chr4 (230-419)||(5203964-5204153)
chr4 (84-149)||(51303308-51303373)
chr4 (84-149)||(5204278-5204344)
chr4 (312-418)||(10484032-10484138)
chr4 (439-489)||(46762898-46762948)
chr4 (91-149)||(9536400-9536458)
chr4 (345-414)||(51302999-51303068)
chr4 (87-143)||(10470425-10470481)
[»] chr1 (2 HSPs)
chr1 (163-427)||(1928859-1929123)
chr1 (27-110)||(1929518-1929603)
[»] chr2 (1 HSPs)
chr2 (258-420)||(35060931-35061093)
[»] chr7 (1 HSPs)
chr7 (357-419)||(29339730-29339792)


Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 163 - 508
Target Start/End: Original strand, 38224432 - 38224784
Alignment:
Q  163 tattcattgtgggtttctctggtttcatttcaggatcatttgacatcttgttgactgagctttctattatctatcacaatctgatcatggagaaggattt 262  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38224432 tattcattgcgggtttctctggtttcattccaggatcatttgacatcttgttgactgagctttctattatctatcacaatctgatcatggagaaggattt 38224531  T
Q  263 gagttatacaaagcttgtttgctactctaattatcttgtttgcgttaatcttataaatggtcccattgagtgttatcacatctatgttgttctcatccaa 362  Q
    | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  38224532 gggttatacaaagcttgtttgctactctgattatcttgtttgcgttaatcttataaatggccccattgagtgttatcacatctatgttgttctcatcaaa 38224631  T
Q  363 gacataaagcaattgcttcaccataccagcgtaacggtttctcacactcttagagagaaaaat-------catacttcatggcaaagcttagagcttctt 455  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       || |||| ||||||||||||||||||||||    
T  38224632 gacataaagcaattgcttcaccataccagcgtaacggtttctcacactcttagagagaaaaatcagtgtgcagacttaatggcaaagcttagagcttctt 38224731  T
Q  456 ctgatattgatcttcttcttcacgagttttcccctgttggtcttgttcatctc 508  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  38224732 ctgatattgatcttcctcttcacgagttttcccctgttggtcttgttaatctc 38224784  T

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Target: chr4; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 38224226 - 38224391
Alignment:
Q  1 atgactgcgttttacttgcaacattaagaatttgattgagagcgttgtattcaatttttccccttctgtttctgttgctatggctaacaggtacatcaga 100  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  38224226 atgactgcgttttacttgcaacattaagaattcgattgagagcattgtattcaatttttccccttctgtttctattgatatggctaacaggtacatcaga 38224325  T
Q  101 tggaataatattaatatttcgggtgctattcttaatgtggatggtagttaccatgacactcctatt 166  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38224326 tggaataataataatatttcgggtgctattcttaatgtggatggtagttagcatgacactcctatt 38224391  T

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Target: chr4; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 163 - 400
Target Start/End: Original strand, 38945624 - 38945861
Alignment:
Q  163 tattcattgtgggtttctctggtttcatttcaggatcatttgacatcttgttgactgagctttctattatctatcacaatctgatcatggagaaggattt 262  Q
    ||||||||| | ||||||||| ||||||| ||||||||||||||||||||||| | |||||||||  ||| ||||||  ||||||||||| |||||||||    
T  38945624 tattcattgcgagtttctctgatttcattccaggatcatttgacatcttgttggccgagctttctgctatttatcacggtctgatcatggcgaaggattt 38945723  T
Q  263 gagttatacaaagcttgtttgctactctaattatcttgtttgcgttaatcttataaatggtcccattgagtgttatcacatctatgttgttctcatccaa 362  Q
    | |||||||| ||||||||||||||||  ||| |||||||||| |||||||||||||||  || ||||||   || || |||||||||||| ||||||||    
T  38945724 gggttatacatagcttgtttgctactcggattctcttgtttgcattaatcttataaatgacccgattgagacgtaccatatctatgttgttttcatccaa 38945823  T
Q  363 gacataaagcaattgcttcaccataccagcgtaacggt 400  Q
    ||||||||||||||||||||||||| || |||||||||    
T  38945824 gacataaagcaattgcttcaccataacaacgtaacggt 38945861  T

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Target: chr4; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 243 - 419
Target Start/End: Complemental strand, 10470281 - 10470105
Alignment:
Q  243 ctgatcatggagaaggatttgagttatacaaagcttgtttgctactctaattatcttgtttgcgttaatcttataaatggtcccattgagtgttatcaca 342  Q
    ||||||||||  || |||||||||||| |||| |||| |||||| ||| ||| ||||| |||||| || ||||| ||||||||||| | | | || || |    
T  10470281 ctgatcatggctaaagatttgagttatgcaaaacttgcttgctattctgattctcttgcttgcgtcaaccttattaatggtcccatcgtgagataccata 10470182  T
Q  343 tctatgttgttctcatccaagacataaagcaattgcttcaccataccagcgtaacggtttctcacactcttagagag 419  Q
    ||||||| |||||||||||||| ||||| ||| ||||||| || ||||    |||||||||||||||||||||||||    
T  10470181 tctatgtggttctcatccaagagataaaacaaatgcttcaacaaaccaatccaacggtttctcacactcttagagag 10470105  T

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Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 38945499 - 38945582
Alignment:
Q  83 gctaacaggtacatcagatggaataatattaatatttcgggtgctattcttaatgtggatggtagttaccatgacactcctatt 166  Q
    ||||||| |||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||    
T  38945499 gctaacaagtacgtcagatggaataataataatatttcaggtgctattcttaatgtggatggtagttgccatgacactcatatt 38945582  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 230 - 419
Target Start/End: Complemental strand, 5204153 - 5203964
Alignment:
Q  230 tatctatcacaatctgatcatggagaaggatttgagttatacaaagcttgtttgctactctaattatcttgtttgcgttaatcttataaatggtcccatt 329  Q
    ||||||||||   ||||||||||  ||||||||| | ||| || | |||  |||||| ||| ||| ||||| |||| | || |||||| |||| ||||||    
T  5204153 tatctatcacgggctgatcatggcaaaggatttgggatatgcagaactttcttgctattctgattctcttgcttgcatcaaccttatatatggccccatt 5204054  T
Q  330 gagtgttatcacatctatgttgttctcatccaagacataaagcaattgcttcaccataccagcgtaacggtttctcacactcttagagag 419  Q
    ||| | |  || ||||||| |||| |||| ||||||||||| ||| ||||||| || | ||  |||||||||||||||||||||||||||    
T  5204053 gagaggttccatatctatgctgttatcatacaagacataaaacaaatgcttcaacaaatcaatgtaacggtttctcacactcttagagag 5203964  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 149
Target Start/End: Complemental strand, 51303373 - 51303308
Alignment:
Q  84 ctaacaggtacatcagatggaataatattaatatttcgggtgctattcttaatgtggatggtagtt 149  Q
    ||||||||||||||||||||||  |||  ||| |||| ||||||||||||||||||||||| ||||    
T  51303373 ctaacaggtacatcagatggaaagataacaatttttcaggtgctattcttaatgtggatggaagtt 51303308  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 149
Target Start/End: Complemental strand, 5204344 - 5204278
Alignment:
Q  84 ctaacaggtacatcagatggaa-taatattaatatttcgggtgctattcttaatgtggatggtagtt 149  Q
    ||||||||||||| |||||||| |||||  ||| |||| ||||||||||||||||||||||| ||||    
T  5204344 ctaacaggtacattagatggaaataataacaatttttcaggtgctattcttaatgtggatggaagtt 5204278  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 418
Target Start/End: Complemental strand, 10484138 - 10484032
Alignment:
Q  312 cttataaatggtcccattgagtgttatcacatctatgttgttctcatccaagacataaagcaattgcttcaccataccagcgtaacggtttctcacactc 411  Q
    ||||| ||||||||||||||| | || || |||| |||||||||||||||||| ||||| | | ||||||| || | ||  | |||  ||||||||||||    
T  10484138 cttattaatggtcccattgagagataccatatctctgttgttctcatccaagagataaaaccaatgcttcaacaaatcaatgcaacaatttctcacactc 10484039  T
Q  412 ttagaga 418  Q
    |||||||    
T  10484038 ttagaga 10484032  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 439 - 489
Target Start/End: Original strand, 46762898 - 46762948
Alignment:
Q  439 aaagcttagagcttcttctgatattgatcttcttcttcacgagttttcccc 489  Q
    ||||||||||||| ||||||||||||| ||||||||||| || ||||||||    
T  46762898 aaagcttagagctgcttctgatattgagcttcttcttcatgatttttcccc 46762948  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 9536400 - 9536458
Alignment:
Q  91 gtacatcagatggaataatattaatatttcgggtgctattcttaatgtggatggtagtt 149  Q
    |||||||||||||||||| | |||||| | |||||| |||||||| |||||||| ||||    
T  9536400 gtacatcagatggaataacaataatatcttgggtgcaattcttaacgtggatggaagtt 9536458  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 414
Target Start/End: Complemental strand, 51303068 - 51302999
Alignment:
Q  345 tatgttgttctcatccaagacataaagcaattgcttcaccataccagcgtaacggtttctcacactctta 414  Q
    ||||||||| |||| ||||||||||| ||| ||||||| ||   ||  ||||||||||||||||||||||    
T  51303068 tatgttgttatcatacaagacataaaacaaatgcttcatcaactcaatgtaacggtttctcacactctta 51302999  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 10470481 - 10470425
Alignment:
Q  87 acaggtacatcagatggaataatattaatatttcgggtgctattcttaatgtggatg 143  Q
    ||||||||||||||||||| |||| |||| || |  ||| |||||||||||||||||    
T  10470481 acaggtacatcagatggaacaataataattttacaagtgttattcttaatgtggatg 10470425  T

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Target: chr1 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 163 - 427
Target Start/End: Complemental strand, 1929123 - 1928859
Alignment:
Q  163 tattcattgtgggtttctctggtttcatttcaggatcatttgacatcttgttgactgagctttctattatctatcacaatctgatcatggagaaggattt 262  Q
    |||||||||||||| |||||| |||||||  |||||||||||||||||||||| | |||||||||  |||||||||   |||||||||||||||||||||    
T  1929123 tattcattgtgggtatctctgatttcattctaggatcatttgacatcttgttggccgagctttctgctatctatcatggtctgatcatggagaaggattt 1929024  T
Q  263 gagttatacaaagcttgtttgctactctaattatcttgtttgcgttaatcttataaatggtcccattgagtgttatcacatctatgttgttctcatccaa 362  Q
    |||||||||| ||||||||||||||||| ||| |||||||||| |||||||||||||||  || |||||| | || | ||||||||||||||||||||||    
T  1929023 gagttatacagagcttgtttgctactctgattctcttgtttgcattaatcttataaatgaccctattgagaggtacctcatctatgttgttctcatccaa 1928924  T
Q  363 gacataaagcaattgcttcaccataccagcgtaacggtttctcacactcttagagagaaaaatca 427  Q
     |||||||| ||||| ||||||||| || ||||||| ||||||||||||||||||||| ||||||    
T  1928923 aacataaagtaattgtttcaccataacaacgtaacgatttctcacactcttagagagagaaatca 1928859  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 1929603 - 1929518
Alignment:
Q  27 agaatttgattgagagcgttgtattcaatttttc--cccttctgtttctgttgctatggctaacaggtacatcagatggaataata 110  Q
    |||||| |||||||||| ||| | |||||||||   ||||| |||||||| ||||| | |||||||||||||||||||||||||||    
T  1929603 agaattcgattgagagcattgcactcaattttttttcccttatgtttctgctgctacgactaacaggtacatcagatggaataata 1929518  T

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Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 258 - 420
Target Start/End: Complemental strand, 35061093 - 35060931
Alignment:
Q  258 gatttgagttatacaaagcttgtttgctactctaattatcttgtttgcgttaatcttataaatggtcccattgagtgttatcacatctatgttgttctca 357  Q
    |||||| ||||| || | |||| |||||| ||| ||| ||||| |||| | || ||||| ||||||||||||||  | || || |||||  |||||||||    
T  35061093 gatttgggttatgcataacttgcttgctattctgattctcttgcttgcatcaaccttattaatggtcccattgaaaggtaccatatctacattgttctca 35060994  T
Q  358 tccaagacataaagcaattgcttcaccataccagcgtaacggtttctcacactcttagagaga 420  Q
    ||||||||||||| ||| ||||||| || ||||  ||||| ||||||||||||||||||||||    
T  35060993 tccaagacataaaacaaatgcttcaacaaaccaatgtaacagtttctcacactcttagagaga 35060931  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 419
Target Start/End: Original strand, 29339730 - 29339792
Alignment:
Q  357 atccaagacataaagcaattgcttcaccataccagcgtaacggtttctcacactcttagagag 419  Q
    |||||||||||||| |||||||| ||||| | ||  || |||||||||||| |||||||||||    
T  29339730 atccaagacataaaacaattgctccaccaaatcaatgtgacggtttctcacgctcttagagag 29339792  T

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