View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20379_high_8 (Length: 236)
Name: NF20379_high_8
Description: NF20379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20379_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 294775 - 294994
Alignment:
| Q |
1 |
tcttttcctcctcaacatccaccacattctttgagatcaaaacaccagaataaacaacaccaaatgacccttcaccgattttatctccaacaagaaaatc |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
294775 |
tcttgtcctcctcaacatccaccacattctttgagatcaaaacaccagaataaacaacaccaaatgacccttcaccgattttatctccaacaagaaaatc |
294874 |
T |
|
| Q |
101 |
accagtcttcaaatttctccttccagatagattgtcaaaaccaagttgaagaggagcaaaaaggtaagcatcaatggcaccaataagaacacctggtctt |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
294875 |
accagtcttcaagtttctccttccagatagattgtcaaaaccaagttgaagaggagcaaaaaggtaagcatcaatggcaccaataagaacacctggtctt |
294974 |
T |
|
| Q |
201 |
gcagttaagtatatccatat |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
294975 |
gcagttaagtatatccatat |
294994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 38 - 207
Target Start/End: Complemental strand, 27490881 - 27490712
Alignment:
| Q |
38 |
caaaacaccagaataaacaacaccaaatgacccttcaccgattttatctccaa-caagaaaatcaccagtcttcaaatttctccttccagatagattgtc |
136 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| || || ||| | |||| ||||||| |||| |||||||||||||||||||||||| | | || |
|
|
| T |
27490881 |
caaaacagcagaataaacaacaccaaatgacccttctcctatcttaccaccaatcaagaaa-tcactcctcttcaaatttctccttccagataaactatc |
27490783 |
T |
|
| Q |
137 |
aaaaccaagttgaagaggagcaaaaaggtaagcatcaatggcaccaataagaacacctggtcttgcagtta |
207 |
Q |
| |
|
||| ||| ||| | ||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27490782 |
caaaacaaattgcattggagccaaaaggtatgcatcaatagcaccaataagaacacctggtcttgcagtta |
27490712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University