View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20379_high_9 (Length: 234)
Name: NF20379_high_9
Description: NF20379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20379_high_9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 35994631 - 35994849
Alignment:
| Q |
16 |
atagctaacccatttgagaacctcttcaatcctatccaattcttcaataacatctctaggacctttaataacagaatgattagtaggtacaggaggaata |
115 |
Q |
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| T |
35994631 |
atagctaacccatttgagaaactcttcaatcctatccaattcttcaataacacctttaggacctttaatagcagaatgattagtaggtacaggaggaata |
35994730 |
T |
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| Q |
116 |
ggtttcctataaggaagataaaaaggagcaataggaacatcttgtcccttataatgcttccacttcacataatcccattcctcaggcgtagcaaaagcag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35994731 |
ggtttcctataaggaagataaaaaggagcaataggaacatcttgtcccttataatgcttccacttcacataatcccattcctcaggcgtagccaaagcag |
35994830 |
T |
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| Q |
216 |
ggtcccaaccagtaccagt |
234 |
Q |
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||||||||||||||||||| |
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| T |
35994831 |
ggtcccaaccagtaccagt |
35994849 |
T |
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