View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20379_low_3 (Length: 462)

Name: NF20379_low_3
Description: NF20379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20379_low_3
NF20379_low_3
[»] chr3 (3 HSPs)
chr3 (9-445)||(37460538-37460974)
chr3 (379-431)||(21196422-21196474)
chr3 (379-445)||(48098134-48098200)
[»] chr2 (5 HSPs)
chr2 (144-313)||(7118172-7118344)
chr2 (146-207)||(9317798-9317859)
chr2 (241-372)||(9317651-9317782)
chr2 (38-110)||(3144300-3144372)
chr2 (38-118)||(9325975-9326056)
[»] scaffold0667 (3 HSPs)
scaffold0667 (139-211)||(1010-1082)
scaffold0667 (313-372)||(887-945)
scaffold0667 (67-103)||(1110-1146)
[»] chr5 (1 HSPs)
chr5 (379-445)||(2897956-2898022)
[»] chr1 (1 HSPs)
chr1 (379-433)||(48898887-48898941)
[»] scaffold0915 (1 HSPs)
scaffold0915 (380-433)||(808-861)
[»] chr7 (1 HSPs)
chr7 (380-433)||(28985302-28985355)


Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 9 - 445
Target Start/End: Complemental strand, 37460974 - 37460538
Alignment:
Q  9 gattattctagccgtaacttgctggtagtttctaatcgtaacttgctggcagctccttttgttattaaactaaaccataatgtcaatgccatggtgcaaa 108  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37460974 gattattctagccgtaacttactggtagtttctaatcgtaacttgctggtagctccttttgttattaaactaaaccataatgtcaatgccatggtgcaaa 37460875  T
Q  109 agctccttttgttattccaaactaaaccatattacaacaattacatgtattgtatctgcattctttatctaatttcatttattttgcaattgtattgtaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37460874 agctccttttgttattccaaactaaaccatattacaacaattacatgtattgtatctgcattctttatctaatttcatttattttgcaattgttttgtaa 37460775  T
Q  209 ttctaaagtgagtttgtttatttttgggagtctagctagttgtgcaattcagatccttactatagtatctggtatatcaatgcataacttgcaaacttgt 308  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37460774 ttctaaagtgagtttgtctatttttgggagtctagctagttgtgcaattcagatccttactatagtatctggtatatcaatgcataacttgcaaacttgt 37460675  T
Q  309 actttgtacaaatggtattagaaagaaacacagttgaggaaatcccatattaatctttatagaaacacagttgcttttctgatatcaaatgtttcctaat 408  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  37460674 accttgtacaaatggtattagaaagaaacacagttgaggaaatcccatattaatctttatagaaacacagttgcttttctgacatcaaatgtttcctaat 37460575  T
Q  409 gacacaagtaaatgacaaaattacctccggcggtagt 445  Q
    |||||||||||||||||||||||||||| ||||||||    
T  37460574 gacacaagtaaatgacaaaattacctccagcggtagt 37460538  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 431
Target Start/End: Original strand, 21196422 - 21196474
Alignment:
Q  379 ttgcttttctgatatcaaatgtttcctaatgacacaagtaaatgacaaaatta 431  Q
    |||||||||||| ||  ||| ||||||| ||||||||||||||||||||||||    
T  21196422 ttgcttttctgacatagaatatttcctattgacacaagtaaatgacaaaatta 21196474  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 445
Target Start/End: Complemental strand, 48098200 - 48098134
Alignment:
Q  379 ttgcttttctgatatcaaatgtttcctaatgacacaagtaaatgacaaaattacctccggcggtagt 445  Q
    |||||||||||| ||  |||  |||||| ||||||||||||||||| ||||||||||| || |||||    
T  48098200 ttgcttttctgacatagaatacttcctattgacacaagtaaatgaccaaattacctccagcagtagt 48098134  T

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Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 144 - 313
Target Start/End: Original strand, 7118172 - 7118344
Alignment:
Q  144 aacaattacatgtattgtatctgcattctttatctaatttcatttattttgcaattgtattgtaattctaaagtgagtttgtttatttttgggagtc--- 240  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||        ||||||||||||||  ||||||||||||||  |       
T  7118172 aacaattacatgtattgtatccgcattctttatctaatttcatttattttgtaatt--------attctaaagtgagtaagtttatttttgggaagcgga 7118263  T
Q  241 --tagcta---gttgtgcaattcagatccttactatagtatct---ggtatatcaatgcataacttgcaaacttgtacttt 313  Q
      ||||||   ||||||| |||| |||||||| ||||||||||   |||||| |||||||||| ||| |||||||||||||    
T  7118264 gatagctagttgttgtgcgattctgatccttattatagtatctgcaggtataccaatgcataagttgtaaacttgtacttt 7118344  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 9317859 - 9317798
Alignment:
Q  146 caattacatgtattgtatctgcattctttatctaatttcatttattttgcaattgtattgta 207  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||    
T  9317859 caatcacatgtattgtatcggcattctttatctaatttcatttattttgaaattgttttgta 9317798  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 241 - 372
Target Start/End: Complemental strand, 9317782 - 9317651
Alignment:
Q  241 tagctagttgtgcaattcagatccttactatagtatctggtatatcaatgcataacttgcaaacttgtact-ttgtacaaatggtattagaaagaaacac 339  Q
    ||||||||| ||| |||| |||||||| |||  ||||||||||| |||||||||| ||  |||||||||||  |||||||| |||||||| ||||||||     
T  9317782 tagctagttctgcgattctgatccttattatcatatctggtataccaatgcataagttataaacttgtactcatgtacaaagggtattaggaagaaacaa 9317683  T
Q  340 agttgaggaaatcccatattaatctttatagaa 372  Q
    || ||||| ||||| |||||||| || ||||||    
T  9317682 agctgagg-aatccaatattaattttcatagaa 9317651  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 3144372 - 3144300
Alignment:
Q  38 ttctaatcgtaacttgctggcagctccttttgttattaaactaaaccataatgtcaatgccatggtgcaaaag 110  Q
    ||||||||||||||||||||||  |||  | | |||||||| ||| |||||||||||||||||||||||||||    
T  3144372 ttctaatcgtaacttgctggcaattccagtcggtattaaacaaaagcataatgtcaatgccatggtgcaaaag 3144300  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 118
Target Start/End: Complemental strand, 9326056 - 9325975
Alignment:
Q  38 ttctaatcgtaacttgctggcagctccttttgttattaaactaaaccat-aatgtcaatgccatggtgcaaaagctcctttt 118  Q
    |||||||||||| ||||||| || || |||||||||||||| ||| ||| |||||||||||||||| || |||||| |||||    
T  9326056 ttctaatcgtaaattgctggtagttcattttgttattaaacaaaagcataaatgtcaatgccatggcgcgaaagctactttt 9325975  T

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Target: scaffold0667 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 1082 - 1010
Alignment:
Q  139 attacaacaattacatgtattgtatctgcattctttatctaatttcatttattttgcaattgtattgtaattc 211  Q
    |||| ||||| || |||||||||||| ||||||||||| |||||| ||||||||||||||||| |||||||||    
T  1082 attataacaactatatgtattgtatcggcattctttatataattttatttattttgcaattgttttgtaattc 1010  T

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Target: scaffold0667; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 945 - 887
Alignment:
Q  313 tgtacaaatggtattagaaagaaacacagttgaggaaatcccatattaatctttatagaa 372  Q
    |||||| ||||||||||||||||||| |||||||| |||| ||| |||||||| ||||||    
T  945 tgtacagatggtattagaaagaaacaaagttgagg-aatctcatgttaatcttcatagaa 887  T

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Target: scaffold0667; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 1146 - 1110
Alignment:
Q  67 ttgttattaaactaaaccataatgtcaatgccatggt 103  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  1146 ttgttattaaacaaaaccataatgtcgatgccatggt 1110  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 445
Target Start/End: Original strand, 2897956 - 2898022
Alignment:
Q  379 ttgcttttctgatatcaaatgtttcctaatgacacaagtaaatgacaaaattacctccggcggtagt 445  Q
    |||||||| ||| ||  ||| ||||||| ||||||||||||||||| ||||||||||| ||||||||    
T  2897956 ttgcttttttgacattgaatatttcctattgacacaagtaaatgaccaaattacctccagcggtagt 2898022  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 433
Target Start/End: Original strand, 48898887 - 48898941
Alignment:
Q  379 ttgcttttctgatatcaaatgtttcctaatgacacaagtaaatgacaaaattacc 433  Q
    |||||||||||| ||||||| |||| || ||||| ||||||||||| ||||||||    
T  48898887 ttgcttttctgacatcaaatatttcatattgacaaaagtaaatgaccaaattacc 48898941  T

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Target: scaffold0915 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0915
Description:

Target: scaffold0915; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 433
Target Start/End: Complemental strand, 861 - 808
Alignment:
Q  380 tgcttttctgatatcaaatgtttcctaatgacacaagtaaatgacaaaattacc 433  Q
    |||| |||||| |||||| |||||||||  ||||||||||||||| ||||||||    
T  861 tgctgttctgacatcaaaagtttcctaaaaacacaagtaaatgacgaaattacc 808  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 433
Target Start/End: Complemental strand, 28985355 - 28985302
Alignment:
Q  380 tgcttttctgatatcaaatgtttcctaatgacacaagtaaatgacaaaattacc 433  Q
    |||| |||||| |||||| |||||||||  ||||||||||||||| ||||||||    
T  28985355 tgctgttctgacatcaaaagtttcctaaaaacacaagtaaatgacgaaattacc 28985302  T

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