View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20379_low_5 (Length: 361)
Name: NF20379_low_5
Description: NF20379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20379_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 11 - 346
Target Start/End: Original strand, 45645569 - 45645904
Alignment:
| Q |
11 |
cagagattgctgaacttctaaaaaagtatcgcatggtcttaaattcatggacatcaacttcttatcaaatcagaatctccaggattgaattcgaactaac |
110 |
Q |
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| T |
45645569 |
cagagattgctcaacttctaaaaaagtatcgcatggtcttaaattcatggacatcaacttcttatcaaatcagaatctccaagattgaattcgaactaac |
45645668 |
T |
|
| Q |
111 |
tccactgacccttctatgtgtttgttcttagtcgggctttgctggaattggagagctcgtaatattttttgtgtgggaaaggaaatgatctttttgtttc |
210 |
Q |
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| T |
45645669 |
tccactgacctttctatgtgtttgttcttagtcgggctttgctggaattggagagctcgtaatattttttgtgtgggaaaggaaatgatctttttgtttc |
45645768 |
T |
|
| Q |
211 |
gagtcctagcagaaacaagaaaacttgcctctgttatggaagtttgtttttgaaatagtaatatttcgccaattgacattagatgggtgtcttggcatcc |
310 |
Q |
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| T |
45645769 |
gagtcctagcagaaacaagaaaacttgcctctgttatggaagtttgtttttgaaatagtaatatttcgcgaattgacattagatgggtgtcttggcatcc |
45645868 |
T |
|
| Q |
311 |
aacaagagagaattgctttgttctaaacgtggatgg |
346 |
Q |
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| T |
45645869 |
aacaagagagaattgctttgttccaaacgtggatgg |
45645904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 12 - 254
Target Start/End: Original strand, 51918327 - 51918571
Alignment:
| Q |
12 |
agagattgctgaacttctaaaaaagtatcgcatggtcttaaattcatggacatcaacttctta-tcaaatcagaatctccaggattgaattcgaactaac |
110 |
Q |
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| T |
51918327 |
agagattgctcaacttctaaaaaagtatggcatggtcttggattcatggatatcaacttctttctcaaatttgaatcttcaggattggattcgaactaac |
51918426 |
T |
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| Q |
111 |
tccactgacccttctatgtgtttgttcttagtcgggcttt-gctggaattggagagctcgtaatattttttgtgtgggaaaggaaatgatctttttgttt |
209 |
Q |
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|| | | |||||||||||||||||||||| ||| |||| | ||||||||||||||| || ||||| |||||||||||||||||| ||||||||||||| |
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| T |
51918427 |
tctatcggcccttctatgtgtttgttcttaatcgaacttttggtggaattggagagcttgttatattgtttgtgtgggaaaggaaacgatctttttgttt |
51918526 |
T |
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| Q |
210 |
cgagtcctagcagaaacaagaaaacttgcctctgttatggaagtt |
254 |
Q |
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| T |
51918527 |
caagttctagcagaaacaagaaaacttgcctctattatggaagtt |
51918571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 41 - 312
Target Start/End: Complemental strand, 1515622 - 1515344
Alignment:
| Q |
41 |
gcatggtcttaaattcatggacatcaacttcttatcaaatcagaatctccaggattgaattcgaactaactccactgacccttctatgtgtttgttctta |
140 |
Q |
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|||||||||| ||||| ||||| | |||||||||||| |||||| ||||||| |||||||||| ||||| || |||||| | |||||||||||| |
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| T |
1515622 |
gcatggtcttggattcacggacaacggcttcttatcaaaattgaatctttaggattggattcgaactacctccattggcccttcaacatgtttgttctta |
1515523 |
T |
|
| Q |
141 |
gtcgggctttgctggaattggagagctcgtaatattttttgtgtgggaaagg--aaatgatctttttgtttcgagtcctagcagaaacaagaaaacttgc |
238 |
Q |
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| T |
1515522 |
gttgggctttggtggaattggagagattgtaatattgtttacatgggaaaggaaaaaaaatctttttgtttcaagtcttagaagagacaataacacttgc |
1515423 |
T |
|
| Q |
239 |
ctctgttatggaag-----tttgtttttgaaatagtaatatttcgccaattgacattagatgggtgtcttggcatccaa |
312 |
Q |
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||| ||||||||| ||||||||| ||| | |||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
1515422 |
ctcaattatggaagtttaatttgtttttcaaacaataatatctcgccaattgacattagataggtgtcttggcatccaa |
1515344 |
T |
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