View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20379_low_7 (Length: 325)
Name: NF20379_low_7
Description: NF20379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20379_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 29357734 - 29358037
Alignment:
| Q |
1 |
aatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttgtttttgagagacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29357734 |
aatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttgtttttgagagacc |
29357833 |
T |
|
| Q |
101 |
ctttgatgatcactttaatcgtagatggaatttagcaagcaatggaaatattgcacatgtggtagtgttgaagcacattactattgaaatgcttgacacc |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29357834 |
ctttgatgatcactttactcgtagatggaatttagcaagcaatggaaatattgcacatgtggtagtgttgaagcacattactattgaaatgcttgacacc |
29357933 |
T |
|
| Q |
201 |
tttgtttgtgaatttatccaaaaacgatcgatttggtctaaagatggacaatttcagcctccatgtattgcaagcgacgttggttctagaaattgtgctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29357934 |
tttgtttgtgaatttatccaaaaacgatcgatttggtctaaagatggacaatttcagcttccatgtattgcaagcgacgttggttctagaaattgtgctt |
29358033 |
T |
|
| Q |
301 |
gttc |
304 |
Q |
| |
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|||| |
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| T |
29358034 |
gttc |
29358037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 29341707 - 29342013
Alignment:
| Q |
1 |
aatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttgtttttgagagacc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29341707 |
aatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttgtttttgagagacc |
29341806 |
T |
|
| Q |
101 |
ctttgatgatcactttaatcgtagatggaatttagcaagcaatggaaatattgcacatgtggtagtgttgaagcacattactattgaaatgcttgacacc |
200 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29341807 |
ctttgatgatcactttactcgtagatggaatttagcaagcaatgaaaatattgcacatgtggtagtgttgaagcacattactattgaaatgcttgacacc |
29341906 |
T |
|
| Q |
201 |
tttgtttgtgaatttatccaaaaacgatcgatttggtctaaagatggacaatttcagcctccatgtattgcaagcgacgttggttctagaaattgtgctt |
300 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29341907 |
tttgttcatgaatttatccaaaaacgatcgatttggtctaaagatggacactttcaacctccatgtattgcaagcgacgttggttctaaaaattgtgctt |
29342006 |
T |
|
| Q |
301 |
gttctat |
307 |
Q |
| |
|
||||||| |
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|
| T |
29342007 |
gttctat |
29342013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 44660076 - 44659773
Alignment:
| Q |
1 |
aatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttgtttttgagagacc |
100 |
Q |
| |
|
|||| |||| ||| |||| ||| |||||||||| |||||||||||||||||||||||| ||||||||| | ||||||||||||||||| ||||||||||| |
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| T |
44660076 |
aatgtataatgaaagcacattatttactaaatctactacgtgatgctggaattggtgctatgttaaacaaatttagcaacatagttgtgtttgagagacc |
44659977 |
T |
|
| Q |
101 |
ctttgatgatcactttaatcgtagatggaatttagcaagcaatggaaatattgcacatgtggtagtgttgaagcacattactattgaaatgcttgacacc |
200 |
Q |
| |
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| | ||||||||||||| ||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||| ||||| |||||||||| ||| | |
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| T |
44659976 |
cctggatgatcactttactcgtagatggaatttggcaagcaacaaaaatactgcacatgtggtagtgttgaagcacgttactgttgaaatgctcgactca |
44659877 |
T |
|
| Q |
201 |
tttgtttgtgaatttatccaaaaacgatcgatttggtctaaagatggacaatttcagcctccatgtattgcaagcgacgttggttctagaaattgtgctt |
300 |
Q |
| |
|
||||| ||||||||| |||||| ||| ||||||| |||||||| |||||||||||||||||| ||||| | |||||||||||||||||||||||||| |
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| T |
44659876 |
tttgtccgtgaatttactgaaaaacaatccatttggtataaagatgaacaatttcagcctccatgcattgcgaacgacgttggttctagaaattgtgctt |
44659777 |
T |
|
| Q |
301 |
gttc |
304 |
Q |
| |
|
|||| |
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|
| T |
44659776 |
gttc |
44659773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 44683221 - 44682919
Alignment:
| Q |
1 |
aatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttgtttttgagagacc |
100 |
Q |
| |
|
|||| |||| ||| |||| ||| |||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| || |
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| T |
44683221 |
aatgtataatgaaagcacattatttactaaatctactacgtgatgctggaattggtgctatgttaaacgagttcagcaacatagttgtatttgagaggcc |
44683122 |
T |
|
| Q |
101 |
ctttgatgatcactttaatcgtagatggaatttagcaagcaatggaaatattgcacatgtggtagtgttgaagcacattactattgaaatgcttgacacc |
200 |
Q |
| |
|
| | |||||| |||| |||||||| |||||||| ||| ||| ||| ||||||||||||||||||||||| | || || || |||||||| | |||||| |
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|
| T |
44683121 |
cctcgatgatgacttcaatcgtagctggaatttggcatgcagtgggaatattgcacatgtggtagtgttacaacatgtttctgttgaaatgttggacacc |
44683022 |
T |
|
| Q |
201 |
tttgtttgtgaatttatccaaaaacgatcgatttggtctaaagatggacaatttcagcctccatgtattgcaagcgacgttggttctagaaattgtgctt |
300 |
Q |
| |
|
|||||| ||||||||| |||||||||| |||||||| ||||||| ||||||| |||||| ||| ||||||| || |||||||| | ||||||||||| |
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| T |
44683021 |
tttgttcatgaatttattgaaaaacgatccatttggtcaaaagatgaacaatttaagcctctatgcattgcaaatgatgttggttccaaaaattgtgctt |
44682922 |
T |
|
| Q |
301 |
gtt |
303 |
Q |
| |
|
||| |
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|
| T |
44682921 |
gtt |
44682919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 44640236 - 44640141
Alignment:
| Q |
1 |
aatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttgtttttgaga |
96 |
Q |
| |
|
||||||| | ||||||||||||||| | | | |||| |||||||||||||||||| |||||||||| || |||||||||| |||||||||||||| |
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|
| T |
44640236 |
aatgcatgatgaatgcacgttacttgcaacgtaaacttcgtgatgctggaattggtacaatgttaaatgaatttagcaacacagttgtttttgaga |
44640141 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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