View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2037_high_1 (Length: 954)
Name: NF2037_high_1
Description: NF2037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2037_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 593; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 176 - 933
Target Start/End: Complemental strand, 12827096 - 12826313
Alignment:
| Q |
176 |
aagtgtgattgattgtgtggttatttgtaggatgatgttgatgttgcttgtggttctgaggattcggattttcaaccgttgttaaagccgtatcagcttg |
275 |
Q |
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| T |
12827096 |
aagtgtgattgattgtgtggttatttgtaggatgatgttgatgttgcttgtggttctgaggattcggattttcaaccgttgttaaagccgtatcagcttg |
12826997 |
T |
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| Q |
276 |
ttggtgttaattttttgctgttgttgtatcggaagaggattggaggaggtaaatttttacggtgtttggttatattgcagtgaatttgaattatgtggaa |
375 |
Q |
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| T |
12826996 |
ttggtgttaattttttgctgttgttgtatcggaagaggattggaggaggtaaacttttagagtgtttggttatattgcagtgaatttgaattatgtggaa |
12826897 |
T |
|
| Q |
376 |
tgattttctgtgtttttctatgcagcaacacatgcacggaca-cgatcatgcatttctcaatcttgtgactattttatgtgatgtggtgttgcattcatt |
474 |
Q |
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| T |
12826896 |
tgattttctgtgtttttctatgcagcaacacatgcacagacaccgatcatgcatttctcaatcttgtgactattttatgtgatgtggtgttgcattcatt |
12826797 |
T |
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| Q |
475 |
gtcgtggaacaactgtgtttttctatgaagcattgacgcatgcacga------------acactgacactgatacgttgcaccattataattgaatgtaa |
562 |
Q |
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| T |
12826796 |
gtcgtggaacaactgtgtttttctatgaagcattgacgcatgcacgaacactgatcacgacactgacactgatacgttgcaccagtataattgaatgtaa |
12826697 |
T |
|
| Q |
563 |
tcacatgtcagtagcatgccttagatcagaagtgatggcgcttcagaggtgtttttatgtttgtatctcctgagtttgtgtttgttggaacatcattgtg |
662 |
Q |
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| T |
12826696 |
tcacatgtcagtagcatgccttagatcagaagtgacagcacttcagaggtgtttttatatttgtatctcttgagtttgtgtttgttggaacatcattgtg |
12826597 |
T |
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| Q |
663 |
tagtgccactgctatcat-tgtgta----------gtgccact--gctacactgtttgggatttaggggttaacatggttgtaatgaatctcttgtttga |
749 |
Q |
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| T |
12826596 |
tagtgccactgctattatgtttttaagatttcccgttatcactagggtacactgtttgggatttaggggttagcatggttgtcatgaatctcttgtttga |
12826497 |
T |
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| Q |
750 |
cttttgatttcatgtgtcacagacattattgtgtgtatagtaccactgagatttcattatggatttctcaatcttggtgctgcatcattggattcattgt |
849 |
Q |
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| T |
12826496 |
cttttgatttcatgtgtcacatacattattgtgtgtatagtaccactgagatttcattatggatttctcaatcttggtgctgcatcattggattcattct |
12826397 |
T |
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| Q |
850 |
tgtcgaacgacatgcatgctgtgtgtttgcagctttcaagtttgtgtttattggagcatgattgtgtgtatattgctaatgtga |
933 |
Q |
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| T |
12826396 |
tgtggaacgacatgcatgctgtgtgtttgcagctttcaagtttgtgtttattggagcatgattgtgtgtatattgctaatgtga |
12826313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 12827221 - 12827141
Alignment:
| Q |
21 |
agttgtttggttcttctggtgcggtttgtgataggtattctgaagttgaatcttcttcggttagaattgttactcaggtaa |
101 |
Q |
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| T |
12827221 |
agttgtttggttcttctggtgcggtttgtgataggtattctgaagttgaatcttcttcggttagaattgttactcaggtaa |
12827141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 577 - 672
Target Start/End: Complemental strand, 46632813 - 46632716
Alignment:
| Q |
577 |
catgccttagatcagaagtgatggcgcttcagaggtgttttta-tgtttgtatctcctgagttt-gtgtttgttggaacatcattgtgtagtgccact |
672 |
Q |
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| T |
46632813 |
catgccttagatcagaaatgacggtgcgtcagaggtgtttttggtgtttgcagctcctgagttttgtgtttattggaacatcattgtgtagtgccact |
46632716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 452 - 506
Target Start/End: Complemental strand, 46632990 - 46632936
Alignment:
| Q |
452 |
tgtgatgtggtgttgcattcattgtcgtggaacaactgtgtttttctatgaagca |
506 |
Q |
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| T |
46632990 |
tgtggtgtggtgttgcattcattgtcgtggaacaactctgtttttctatgtagca |
46632936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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