View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2037_high_10 (Length: 379)
Name: NF2037_high_10
Description: NF2037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2037_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 17 - 367
Target Start/End: Original strand, 35480552 - 35480899
Alignment:
| Q |
17 |
ctcattgcccagtctcttcgacaatcctatcccataatcctcatacataggatttacacgacgtaaccaaaactaattagactgacaaaatcaattcggt |
116 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
35480552 |
ctcattgcccagtctctttgacaatcctatcccataatcctcatacataggatttacaccacgtaaccaaaactaa---gactgacaaaatcaattcggt |
35480648 |
T |
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| Q |
117 |
gtactcattgttcagtctcttcccatgatcctatcccataaacctcacgtgtaaaaagatttacatttacatttacataaccaagagtctgaacctaagc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35480649 |
gtactcattgttcagtctcttcccatgatcctatcccataaacctcacgtgtaaaaagatttacatttacatttacataaccaagagtctgaacctaagc |
35480748 |
T |
|
| Q |
217 |
atgacaaaatcaattgacagatgactgtattgcttgaaagtttcactactcagcaaatcaagtaaatgtttaatgatattaaaatggtattagcaaaaat |
316 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35480749 |
atgacaaaatcaattaacagatgactgtattgcttgaaagtttcactactcagcaaatcaagtaaatgtttaatgatattaaaatggtattagcaaaaat |
35480848 |
T |
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| Q |
317 |
ccacttgaaaacccaattagagaaacaacattacaatattaattgttcatc |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35480849 |
ccacttgaaaacccaattagagaaacaacattacaatattaattgttcatc |
35480899 |
T |
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