View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2037_high_4 (Length: 574)
Name: NF2037_high_4
Description: NF2037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2037_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 176 - 484
Target Start/End: Complemental strand, 12827096 - 12826787
Alignment:
| Q |
176 |
aagtgtgattgattgtgtggttatttgtaggatgatgttgatgttgcttgtggttctgaggattcggattttcaaccgttgttaaagccgtatcagcttg |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12827096 |
aagtgtgattgattgtgtggttatttgtaggatgatgttgatgttgcttgtggttctgaggattcggattttcaaccgttgttaaagccgtatcagcttg |
12826997 |
T |
|
| Q |
276 |
ttggtgttaattttttgctgttgttgtatcggaagaggattggaggaggtaaatttttacggtgtttggttatattgcagtgaatttgaattatgtggaa |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12826996 |
ttggtgttaattttttgctgttgttgtatcggaagaggattggaggaggtaaacttttagagtgtttggttatattgcagtgaatttgaattatgtggaa |
12826897 |
T |
|
| Q |
376 |
tgattttctgtgtttttctatgcagcaacacatgcacggaca-cgatcatgcatttctcaatcttgtgactattttatgtgatgtggtgttgcattcatt |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12826896 |
tgattttctgtgtttttctatgcagcaacacatgcacagacaccgatcatgcatttctcaatcttgtgactattttatgtgatgtggtgttgcattcatt |
12826797 |
T |
|
| Q |
475 |
gtcgtggaac |
484 |
Q |
| |
|
|||||||||| |
|
|
| T |
12826796 |
gtcgtggaac |
12826787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 12827221 - 12827141
Alignment:
| Q |
21 |
agttgtttggttcttctggtgcggtttgtgataggtattctgaagttgaatcttcttcggttagaattgttactcaggtaa |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12827221 |
agttgtttggttcttctggtgcggtttgtgataggtattctgaagttgaatcttcttcggttagaattgttactcaggtaa |
12827141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 477 - 556
Target Start/End: Complemental strand, 39481069 - 39480990
Alignment:
| Q |
477 |
cgtggaacgataatcggggtgcttgataccggtgtttggccagagagtcctagcttcaatgatcatgatatgcctccagt |
556 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39481069 |
cgtggaacgataatcggggtgcttgataccggtgtttggccagagagtcctagcttcaatgatcatgatatgcctccagt |
39480990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 452 - 484
Target Start/End: Complemental strand, 46632990 - 46632958
Alignment:
| Q |
452 |
tgtgatgtggtgttgcattcattgtcgtggaac |
484 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
46632990 |
tgtggtgtggtgttgcattcattgtcgtggaac |
46632958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University