View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2037_high_9 (Length: 380)
Name: NF2037_high_9
Description: NF2037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2037_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 21 - 363
Target Start/End: Complemental strand, 35137009 - 35136660
Alignment:
| Q |
21 |
actttccttaaaaccagagcagatgatatgtctaaatatatcaccaacctatataaattctctttggcatgtcactttttgtggtattattttccctcgt |
120 |
Q |
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| T |
35137009 |
actttccttaaaaccagagcagatgatatgtctaaatatatcaccaacctatataaattctctttggcatgtcactttttgtggtattattttccctcgt |
35136910 |
T |
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| Q |
121 |
aacttgtgaagttgatgggaagggtattcacgtggtggtggaccggtggtatgtgaaaaccacgttcatgtga-------tacacaaatttgaactaagt |
213 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35136909 |
aacttgtgaagttgataggaagggtattcacgtggtggtggaccgggggtatgtgaaaaccacgttcatgtgaatcgtgatacacaaatttgaactaagt |
35136810 |
T |
|
| Q |
214 |
gacaaaaattccttgttacacccatctattttctcaactaaactaccgtcaactccttttcttctttttagttagcttctttttctatcctctcaactca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35136809 |
gacaaaaattccttgttacacccatctattttctcaactaaactaccgtcaactccttttcttctttttagttagcttctttttctatcctctcaactca |
35136710 |
T |
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| Q |
314 |
actgtagtacaactgtataaggtaccattcaaccacctttaaccgtacat |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35136709 |
actgtagtacaactgtataaggtaccattcaaccacctttaaccgtacat |
35136660 |
T |
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