View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2037_low_13 (Length: 356)
Name: NF2037_low_13
Description: NF2037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2037_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 35 - 340
Target Start/End: Original strand, 44109526 - 44109830
Alignment:
| Q |
35 |
tgaaggtatgtattatcttttatctgatcatcatcatttatctttttaaatattgtgtataatataatgcgtattgatgcgcaatgttgcctttagttgt |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
44109526 |
tgaaggtatgtattatcttttatctgatcatcatcatttatctttttaaatattgtgtataatataatgtgtattgatgcgcaatgttgcctttagttgt |
44109625 |
T |
|
| Q |
135 |
gtttcccatgcaaatctatttctgttacannnnnnnnagtatcctttctatgcaattgatcatctccatctccttcccgagttccacaatttgacacatc |
234 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44109626 |
gtttcccatgcaaatctatttctgtttcattttttt-aggatcctctctatgcaattgatcatctccatctccttcccgagttccacaatttgacacatc |
44109724 |
T |
|
| Q |
235 |
tttgtctgcatcggaggattaaacctttcactagaaaaacaatactggaattcctcttaaggtgtcctaaactggaaactcttgttgttcctctggtacg |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44109725 |
tttgtctgcatcggaggattaaacctttcactataaaaacagtactggaattcctcttaaggtgtcctaaactggaaactcttgttgttcctctggtacg |
44109824 |
T |
|
| Q |
335 |
ccttat |
340 |
Q |
| |
|
|||||| |
|
|
| T |
44109825 |
ccttat |
44109830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 39 - 339
Target Start/End: Original strand, 40276437 - 40276738
Alignment:
| Q |
39 |
ggtatgtattatcttttatctgatcatcatcatttatctttttaaatattgtgtataatata-----atgcgtattgatgcgcaatgttgcctttagttg |
133 |
Q |
| |
|
|||||||||| |||||| ||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||| | || |
|
|
| T |
40276437 |
ggtatgtattgtcttttttctgaacatcttcatttatctttttaaatattgtgtataatataataagatgcgtattgacgcacaatgttgcctttggctg |
40276536 |
T |
|
| Q |
134 |
tgtttcccatgcaaatctatttctgttacannnnnnnnagtatcctttctatgcaattgatcatctccatctccttcccgagttccacaatttgacacat |
233 |
Q |
| |
|
|||||||||||||| |||||| |||| | || | ||| |||||| ||||||||||||||||| |||||| ||| ||||||||||||||||| |
|
|
| T |
40276537 |
tgtttcccatgcaagtctattgttgtttc-cttttactaggaacctctctatgtaattgatcatctccatccccttcctgagctccacaatttgacacat |
40276635 |
T |
|
| Q |
234 |
ctttgtctgcatcggaggattaaacctttcactagaaaaacaatactggaattcctcttaaggtgtcctaaactggaaactcttgttgttcctctggtac |
333 |
Q |
| |
|
||||||||| || | ||||| |||| |||||||||| || |||||||||||||||||||||||||| ||||| |||||||| |||||| ||||| |
|
|
| T |
40276636 |
ctttgtctggatttggagatta---tcttcagtagaaaaacattaatggaattcctcttaaggtgtcctaaattggaagctcttgtttttcctcaggtac |
40276732 |
T |
|
| Q |
334 |
gcctta |
339 |
Q |
| |
|
||||| |
|
|
| T |
40276733 |
acctta |
40276738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 181 - 340
Target Start/End: Complemental strand, 40450710 - 40450554
Alignment:
| Q |
181 |
tctatgcaattgatcatctccatctccttcccgagttccacaatttgacacatctttgtctg-catcggaggattaaacctttcactagaaaaacaatac |
279 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| | | ||| |||| | |||| |||||||||| || |
|
|
| T |
40450710 |
tctatgtaattgatcatctccatctccttcctgagttccacaatttgacacatctttgtctgactttgga-gattga---cttcagtagaaaaacattaa |
40450615 |
T |
|
| Q |
280 |
tggaattcctcttaaggtgtcctaaactggaaactcttgttgttcctctggtacgccttat |
340 |
Q |
| |
|
||||||| ||| |||||||||||||||||||| | |||||| | |||||||||| |||||| |
|
|
| T |
40450614 |
tggaatttctcctaaggtgtcctaaactggaagcacttgttttacctctggtacaccttat |
40450554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 40450823 - 40450765
Alignment:
| Q |
39 |
ggtatgtattatcttttatctgatcatcatcattta-tctttttaaatattgtgtataa |
96 |
Q |
| |
|
||||||||||| ||||| ||| |||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
40450823 |
ggtatgtattaccttttctctcatcatcttcatttaatctttttaaatattgtgtataa |
40450765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University