View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2037_low_14 (Length: 348)

Name: NF2037_low_14
Description: NF2037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2037_low_14
NF2037_low_14
[»] chr2 (2 HSPs)
chr2 (16-331)||(16264069-16264386)
chr2 (84-158)||(38564585-38564659)
[»] chr1 (4 HSPs)
chr1 (16-123)||(16386032-16386139)
chr1 (62-141)||(38832862-38832941)
chr1 (85-141)||(3346670-3346726)
chr1 (85-141)||(10765780-10765836)
[»] chr6 (2 HSPs)
chr6 (84-159)||(11313984-11314059)
chr6 (62-139)||(16260807-16260884)
[»] chr5 (2 HSPs)
chr5 (85-139)||(19516607-19516661)
chr5 (85-141)||(2808007-2808063)
[»] chr7 (2 HSPs)
chr7 (57-130)||(7567750-7567823)
chr7 (86-159)||(3303504-3303577)
[»] chr4 (1 HSPs)
chr4 (100-144)||(30926000-30926044)
[»] chr8 (2 HSPs)
chr8 (84-139)||(41829457-41829512)
chr8 (86-139)||(29760894-29760947)
[»] chr3 (1 HSPs)
chr3 (83-140)||(43021620-43021677)


Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 16 - 331
Target Start/End: Original strand, 16264069 - 16264386
Alignment:
Q  16 attattagaaaaagcaagttccagtaatacccctttattagagtgatgtttattaaagatataatgaagtttttagtaaaa--tataagtgagagtagac 113  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  16264069 attattagaaaaagcaagttacagtaatacccctttattagagtgatgtttattaaagatataatgaagtttttagtaaaaaatataagtgagagtagac 16264168  T
Q  114 ttgttaacttactccttcgtgtttttagatgaaaattagttagcaatccatattttaaaacagtaacaagtgacttaccccttcatgttttaggtgataa 213  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16264169 ttgttaacttactccttcgtgtttttaggtgaaaattagttagcaatccatattttaaaacagtaacaagtgacttaccccttcatgttttaggtgataa 16264268  T
Q  214 taagttagcaactccagtaataattatattaaaatttaaaatatttccataaaaactttctctgttaaacctatattaatttgtttctatgttagttgtt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16264269 taagttagcaactccagtaataattatattaaaatttaaaatatttccataaaaactttctctgttaaacctatattaatttgtttctatgttagttgtt 16264368  T
Q  314 aatcgataaatgcgtatt 331  Q
    |||| |||||||||||||    
T  16264369 aatctataaatgcgtatt 16264386  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 158
Target Start/End: Original strand, 38564585 - 38564659
Alignment:
Q  84 gtttttagtaaaatataagtgagagtagacttgttaacttactccttcgtgtttttagatgaaaattagttagca 158  Q
    |||||||||||||  |||||| |||||  |||| |||||||||||||| ||||||||| || || | ||||||||    
T  38564585 gtttttagtaaaaattaagtgggagtaaccttgctaacttactccttcatgtttttaggtggaagtaagttagca 38564659  T

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Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 16386032 - 16386139
Alignment:
Q  16 attattagaaaaagcaagttccagtaatacccctttattagagtgatgtttattaaagatataatgaagtttttagtaaaatataagtgagagtagactt 115  Q
    ||||||||||||||||| || ||||| || ||| ||||||||||||||||||||||||||| |||||| |||||| ||||||||||||| |||||| |||    
T  16386032 attattagaaaaagcaaattacagtagtatccccttattagagtgatgtttattaaagatacaatgaactttttaataaaatataagtgggagtaggctt 16386131  T
Q  116 gttaactt 123  Q
    | ||||||    
T  16386132 gctaactt 16386139  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 141
Target Start/End: Complemental strand, 38832941 - 38832862
Alignment:
Q  62 tgtttattaaagatataatgaagtttttagtaaaatataagtgagagtagacttgttaacttactccttcgtgtttttag 141  Q
    ||||||||||||||  || | |||||||  |||||  |||||| |||||| |||| |||||||||||||| |||||||||    
T  38832941 tgtttattaaagatgcaaggtagtttttgataaaaagtaagtgggagtaggcttgctaacttactccttcatgtttttag 38832862  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 3346670 - 3346726
Alignment:
Q  85 tttttagtaaaatataagtgagagtagacttgttaacttactccttcgtgtttttag 141  Q
    ||||||||||||||  |||| ||||||  ||| |||||||||||||| |||||||||    
T  3346670 tttttagtaaaatactagtgggagtagggttgctaacttactccttcatgtttttag 3346726  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 10765836 - 10765780
Alignment:
Q  85 tttttagtaaaatataagtgagagtagacttgttaacttactccttcgtgtttttag 141  Q
    ||||||||||||   ||||| |||||| |||| |||||||||||||| |||||||||    
T  10765836 tttttagtaaaaatcaagtgggagtaggcttgctaacttactccttcatgtttttag 10765780  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 159
Target Start/End: Original strand, 11313984 - 11314059
Alignment:
Q  84 gtttttagtaaaatataagtgagagtagacttgttaacttactccttcgtgtttttagatgaaaattagttagcaa 159  Q
    ||||||||||||| ||||||| ||||||||||| |||||||||| ||| | ||||||| ||| | | |||||||||    
T  11313984 gtttttagtaaaaaataagtgggagtagacttgctaacttactctttcatatttttaggtgagagtaagttagcaa 11314059  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 139
Target Start/End: Complemental strand, 16260884 - 16260807
Alignment:
Q  62 tgtttattaaagatataatgaagtttttagtaaaatataagtgagagtagacttgttaacttactccttcgtgttttt 139  Q
    |||||||| |||||| || | ||||||||||||||  |||||| |||||  |||| ||||| |||||||| |||||||    
T  16260884 tgtttattcaagatacaagggagtttttagtaaaaggtaagtgggagtatgcttgctaactcactccttcatgttttt 16260807  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 19516607 - 19516661
Alignment:
Q  85 tttttagtaaaatataagtgagagtagacttgttaacttactccttcgtgttttt 139  Q
    ||||||||||||  |||||| ||||||||||| |||||||||||||| |||||||    
T  19516607 tttttagtaaaaactaagtgggagtagacttgctaacttactccttcatgttttt 19516661  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 2808063 - 2808007
Alignment:
Q  85 tttttagtaaaatataagtgagagtagacttgttaacttactccttcgtgtttttag 141  Q
    |||||||||||||  |||||  ||||| |||| ||||||||||||||||||||||||    
T  2808063 tttttagtaaaatgcaagtggaagtaggcttgctaacttactccttcgtgtttttag 2808007  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 130
Target Start/End: Original strand, 7567750 - 7567823
Alignment:
Q  57 agtgatgtttattaaagatataatgaagtttttagtaaaatataagtgagagtagacttgttaacttactcctt 130  Q
    |||| |||||||||||||  ||| ||||||||||||||||  |||||| | ||||| ||| |||||||||||||    
T  7567750 agtggtgtttattaaagacttaaagaagtttttagtaaaaagtaagtgggtgtagatttgctaacttactcctt 7567823  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 159
Target Start/End: Original strand, 3303504 - 3303577
Alignment:
Q  86 ttttagtaaaatataagtgagagtagacttgttaacttactccttcgtgtttttagatgaaaattagttagcaa 159  Q
    ||||||| ||| |||| ||||||||| |||| ||||||| || ||| ||||||||||||| | | |||||||||    
T  3303504 ttttagtcaaagataaatgagagtaggcttgctaacttagtctttcatgtttttagatgagagtaagttagcaa 3303577  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 30926000 - 30926044
Alignment:
Q  100 aagtgagagtagacttgttaacttactccttcgtgtttttagatg 144  Q
    ||||| ||||||||||| |||||||||||||| ||||||||||||    
T  30926000 aagtgggagtagacttgctaacttactccttcatgtttttagatg 30926044  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 84 - 139
Target Start/End: Original strand, 41829457 - 41829512
Alignment:
Q  84 gtttttagtaaaatataagtgagagtagacttgttaacttactccttcgtgttttt 139  Q
    |||||| |||||| | ||||| ||||||||||| |||||||||||||| |||||||    
T  41829457 gtttttggtaaaagacaagtgggagtagacttgctaacttactccttcatgttttt 41829512  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 29760947 - 29760894
Alignment:
Q  86 ttttagtaaaatataagtgagagtagacttgttaacttactccttcgtgttttt 139  Q
    ||||||||||||   ||||||||||| |||| |||||||||||||| |||||||    
T  29760947 ttttagtaaaatgctagtgagagtaggcttgctaacttactccttcatgttttt 29760894  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 43021620 - 43021677
Alignment:
Q  83 agtttttagtaaaatataagtgagagtagacttgttaacttactccttcgtgttttta 140  Q
    ||||||||||||||  |||||| | |||| |||| |||||||||||||| ||||||||    
T  43021620 agtttttagtaaaaggtaagtgggtgtaggcttgctaacttactccttcatgttttta 43021677  T

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