View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2037_low_15 (Length: 343)
Name: NF2037_low_15
Description: NF2037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2037_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 330
Target Start/End: Original strand, 2062229 - 2062542
Alignment:
| Q |
17 |
catgtatagttagtgttagtaactgtccaagctccatatcatgcatgannnnnnnngttactcttctatcaaaatttaaaacttgtataaagttttgaca |
116 |
Q |
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| T |
2062229 |
catgtatagttagtgttagtaactgtccaagctccatatcatgcatgattttttttgttactcttctatcaaaatttaaaacttgtataaagttttgaca |
2062328 |
T |
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| Q |
117 |
atcatgtattaactccaaagttctatatcttatttgcagggtttgtgtatcgttcggtttgatggtgcattaagtggaaatccaggaccagctggtgcag |
216 |
Q |
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| T |
2062329 |
atcatatattaactccaaagttctatatcttatttgcagggtttgtgtatcgttcggtttgatggtgcatcaggtggaaatcctggaccagctggtgcag |
2062428 |
T |
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| Q |
217 |
gagctgttctgtatgcggaagatgggagactggcatcaaatttatgcagtagctcaatacgtttttactttataatgttgatttataaaatatagtagtt |
316 |
Q |
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| T |
2062429 |
gagctgttctgtatgcggaagatgggagactggtatcaaatttatgcagtagctcaatacgtttttactttataatgttgatttataaaatatagtagtt |
2062528 |
T |
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| Q |
317 |
gactgttatgtttc |
330 |
Q |
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|||||||||||||| |
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| T |
2062529 |
gactgttatgtttc |
2062542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 17 - 330
Target Start/End: Original strand, 2057803 - 2058116
Alignment:
| Q |
17 |
catgtatagttagtgttagtaactgtccaagctccatatcatgcatgannnnnnnngttactcttctatcaaaatttaaaacttgtataaagttttgaca |
116 |
Q |
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| T |
2057803 |
catgtatagttagtgttagtgactgtccaagctccatatcatgcttgattttttttgttactcttctatcaaaatttaaaacttgtataaagttttgaca |
2057902 |
T |
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| Q |
117 |
atcatgtattaactccaaagttctatatcttatttgcagggtttgtgtatcgttcggtttgatggtgcattaagtggaaatccaggaccagctggtgcag |
216 |
Q |
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| T |
2057903 |
atcataggttaacttcaaagtgctatatcttatttgcagggtttgtgtatcgttcggtttggtggtgtatcgagtggaaatcctggaccagctggggcag |
2058002 |
T |
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| Q |
217 |
gagctgttctgtatgcggaagatgggagactggcatcaaatttatgcagtagctcaatacgtttttactttataatgttgatttataaaatatagtagtt |
316 |
Q |
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| T |
2058003 |
gagttgttatgtttgcggaagatgggcggaaggtatcaactatatgcaacaattcaattggtttttattttatattggtgatttataaaatatagtagct |
2058102 |
T |
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| Q |
317 |
gactgttatgtttc |
330 |
Q |
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| T |
2058103 |
gactgttatgtttc |
2058116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 123 - 330
Target Start/End: Original strand, 2053798 - 2054005
Alignment:
| Q |
123 |
tattaactccaaagttctatatcttatttgcagggtttgtgtatcgttcggtttgatggtgcattaagtggaaatccaggaccagctggtgcaggagctg |
222 |
Q |
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| T |
2053798 |
tattaactctaaagttttataccttatttgtagcgttcttgtatcctcgagtttgatggtgcatcgattggaaatcctggaccagctggtgcaggagcta |
2053897 |
T |
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| Q |
223 |
ttctgtatgcggaagatgggagactggcatcaaatttatgcagtagctcaatacgtttttactttataatgttgatttataaaatatagtagttgactgt |
322 |
Q |
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| T |
2053898 |
ttctgtatgcggaagatgggagaccggtatcaaatttattcaacagttcaattggttttaattttatatttttgatttataaaatattgtagctgaccga |
2053997 |
T |
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| Q |
323 |
tatgtttc |
330 |
Q |
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|||||||| |
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| T |
2053998 |
tatgtttc |
2054005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 99 - 264
Target Start/End: Original strand, 2047220 - 2047383
Alignment:
| Q |
99 |
ttgtataaagttttgacaatcatgtattaactccaaagttctatatcttatttgcagggtttgtgtatcgttcggtttgatggtgcattaagtggaaatc |
198 |
Q |
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||||||||||||||||||||||||| |||||| ||| | |||| ||||||||||| |||| |||| | || |||||||||||||| |||||| |||| |
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| T |
2047220 |
ttgtataaagttttgacaatcatgt--taactctaaactgttataccttatttgcagcgtttttgtaaccttatgtttgatggtgcatcaagtgggaatc |
2047317 |
T |
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| Q |
199 |
caggaccagctggtgcaggagctgttctgtatgcggaagatgggagactggcatcaaatttatgca |
264 |
Q |
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| T |
2047318 |
cgggaccagctggtgcaggagctgtactatatgatgaagattggtgtctggtattaaatttttgca |
2047383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 221
Target Start/End: Original strand, 2041681 - 2041812
Alignment:
| Q |
95 |
aaacttgtataaagttttgacaatcatgtatta-----actccaaagttctatatcttatttgcagggtttgtgtatcgttcggtttgatggtgcattaa |
189 |
Q |
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||||||||||||||||||||||||||| | ||| |||||||| || || ||||||||||||| ||| |||||| ||| ||||||||||| | || |
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| T |
2041681 |
aaacttgtataaagttttgacaatcatatgttatgttaactccaaaattttaaatcttatttgcagagttcttgtatccttcaatttgatggtgcgtcaa |
2041780 |
T |
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| Q |
190 |
gtggaaatccaggaccagctggtgcaggagct |
221 |
Q |
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| T |
2041781 |
gtggaaatcctggatcagctggtgcaagagct |
2041812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 2088190 - 2088238
Alignment:
| Q |
173 |
gtttgatggtgcattaagtggaaatccaggaccagctggtgcaggagct |
221 |
Q |
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| T |
2088190 |
gtttgatggcgcatcgcgtggaaatcccggaccagctggtgcaggagct |
2088238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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