View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2037_low_17 (Length: 282)
Name: NF2037_low_17
Description: NF2037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2037_low_17 |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 3620702 - 3620967
Alignment:
| Q |
1 |
aagagtgttctgaacactatataacagggcatataaccaaaaagaa---atattgaaaatcatgagaacataccataacgacagctttgatgttatcatt |
97 |
Q |
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| T |
3620702 |
aagagtgttcggaacattatataacagggtataaaacaaaaaaatatatatattaaaagtcacgagaacataccataacgacggctttgatgtgattatt |
3620801 |
T |
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| Q |
98 |
ggtgagatcaattgagagacgaccctgattttttaactcaagtaacacgtcaactatatccttctcttcatcatctttcttcctattattaggattgaga |
197 |
Q |
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| T |
3620802 |
ggtgagatcaattgagagacgaccctgattctttaactcaagtaacacgtcaactatatccttctcttcatcatcttttttcctattattaggattgaga |
3620901 |
T |
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| Q |
198 |
tgttccttaagcacttgttcaaaaaactcatccaaagccttgaaagtgttgtcaacacgagcaatt |
263 |
Q |
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| T |
3620902 |
tgttccttgaggacttgttcaaagaactcatccaaagccttgaaagtgttgtcaacacgagcaatt |
3620967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 63 - 260
Target Start/End: Original strand, 3631164 - 3631361
Alignment:
| Q |
63 |
gaacataccataacgacagctttgatgttatcattggtgagatcaattgagagacgaccctgattttttaactcaagtaacacgtcaactatatccttct |
162 |
Q |
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| T |
3631164 |
gaacataccataaggacggatttgatgtgatcattggtgagatcaattgagagacgaccctgattctttaactcaagtaacacgtcaactatatccttct |
3631263 |
T |
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| Q |
163 |
cttcatcatctttcttcctattattaggattgagatgttccttaagcacttgttcaaaaaactcatccaaagccttgaaagtgttgtcaacacgagca |
260 |
Q |
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| T |
3631264 |
cttcttcatctttcttccgattattaggattgagatgttcttgaaggacttgttcaagaaactcatccaaagccttgaaagtcttgtcaacacgagca |
3631361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 63 - 260
Target Start/End: Complemental strand, 14921 - 14724
Alignment:
| Q |
63 |
gaacataccataacgacagctttgatgttatcattggtgagatcaattgagagacgaccctgattttttaactcaagtaacacgtcaactatatccttct |
162 |
Q |
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||||||||||||| ||| | |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14921 |
gaacataccataaggacggatttgatgtgatcattggtgagatcaattgagagacgaccctgattctttaactcaagtaacacgtcaactatatccttct |
14822 |
T |
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| Q |
163 |
cttcatcatctttcttcctattattaggattgagatgttccttaagcacttgttcaaaaaactcatccaaagccttgaaagtgttgtcaacacgagca |
260 |
Q |
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| T |
14821 |
cttcttcatctttcttccgattattaggattgagatgttcttgaaggacttgttcaagaaactcatccaaagccttgaaagtcttgtcaacacgagca |
14724 |
T |
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