View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2037_low_21 (Length: 267)
Name: NF2037_low_21
Description: NF2037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2037_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 25038191 - 25037936
Alignment:
| Q |
1 |
aagattcttattggctcatttgattttattggaatcaattactacacctccaattatgctgccaatataccacaatcaaataatgacacaggcacacctg |
100 |
Q |
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| T |
25038191 |
aagattcttattggctcatttgattttattggaatcaattactacacctccaattatgctgctaatataccacaatcaaataatgacacaggcacacctg |
25038092 |
T |
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| Q |
101 |
gatatttcaaggatactcatgtcaatttaacaagtaagaacaccttgatcacaactccttatgaagaattgaaataaccttaatccattgatagaaaaat |
200 |
Q |
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| T |
25038091 |
gatatttcaaggatactcatgtcaatttaacaagtaagaacaccttgatcacaactccttatgaagaactgaaataaccttaatccattgatagaaaaat |
25037992 |
T |
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| Q |
201 |
caatttctcacatgccttcctttgattttctattccatgaaaagaagataattcat |
256 |
Q |
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| T |
25037991 |
caatttctcacatgccttcctttgattttctattccatggaaagaagataattcat |
25037936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 25017086 - 25016917
Alignment:
| Q |
1 |
aagattcttattggctcatttgattttattggaatcaattactacacctccaattatgctgccaatataccacaatcaaataatgacacaggcacacctg |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| | || |
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| T |
25017086 |
aagatgcttattggctcatttgattttattggaatcaattactacacctccaaatatgctgccaatataccacaatcaaatagcgacacaagtgatccaa |
25016987 |
T |
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| Q |
101 |
gatatttcaaggatactcatgtcaatttaacaagtaagaacaccttgatcacaactccttatgaagaatt |
170 |
Q |
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| T |
25016986 |
gctatctcaaggatactcatgtcaaatttacaagtaagaataccttgtttacaactccttatgaagaatt |
25016917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 4599665 - 4599605
Alignment:
| Q |
6 |
tcttattggctcatttgattttattggaatcaattactacacctccaattatgctgccaat |
66 |
Q |
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||||||||| |||| |||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
4599665 |
tcttattgggtcatatgattttattggaatcaattactacaccaccatgtatgctgccaat |
4599605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 4623998 - 4623933
Alignment:
| Q |
1 |
aagattcttattggctcatttgattttattggaatcaattactacacctccaattatgctgccaat |
66 |
Q |
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|||| ||||||||| |||| |||||||||||||||||||||||||||| || |||||||||||| |
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| T |
4623998 |
aagagtcttattgggtcatatgattttattggaatcaattactacaccagcatgtatgctgccaat |
4623933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 18804814 - 18804875
Alignment:
| Q |
6 |
tcttattggctcatttgattttattggaatcaattactacacctccaattatgctgccaata |
67 |
Q |
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||||||||| |||| |||||||||||||| |||||||||||||||| ||||||| ||||| |
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| T |
18804814 |
tcttattgggtcatacgattttattggaattaattactacacctccacgtatgctgtcaata |
18804875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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