View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2037_low_6 (Length: 442)
Name: NF2037_low_6
Description: NF2037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2037_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 12 - 427
Target Start/End: Complemental strand, 16463618 - 16463203
Alignment:
| Q |
12 |
atgaactgcatataggaacacttggaataaagttaccttgagaatgttttcagtaaggcttgaaggacctcttgatgagaaagatgcaacaatcggtgca |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
16463618 |
atgaactgcatataggaacacttggaataaagttaccttgagaatgttttcagtaaggcttgaaggacctcttgatgagaaagatgcaacaataggtgca |
16463519 |
T |
|
| Q |
112 |
ggcctgtatctagaaactaccgttgttggaagaattgtcgcagttggtttcctgtaacagaacatgataggttgagcatatcaatggtatattatttttc |
211 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
16463518 |
ggcctgtatctagaaactactgttgttggaagaattgttgcagttggtttcctgtaacagaacatgataggttgagcatatctatggtatattatttttc |
16463419 |
T |
|
| Q |
212 |
aactgtttccaatcaacttacagatagaattataataatttgaaccattttannnnnnnattattcttcctttatacaaagatgtttaaaaatcaccctt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16463418 |
aactgtttccaatcaacttacagatagaattataataatttgaaccattttatttttttattattcttcctttatacaaagatgtttaaaaatcaccctt |
16463319 |
T |
|
| Q |
312 |
aggcttttgcattcaataagtgttttaaattgtgatggcaatcgtgcgattttagaagtctttgcaactgcatcttgaccacaaaatattgtaattgcga |
411 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16463318 |
aggcttttgcattcaataagttttttatattgtgatggcaatcgtgcgattttagaagtctttgcaactgcatcttgaccacaaaatattgtaattgcga |
16463219 |
T |
|
| Q |
412 |
tcgtgattgtaactta |
427 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
16463218 |
tcgtgattgtaactta |
16463203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 44 - 173
Target Start/End: Complemental strand, 16493609 - 16493480
Alignment:
| Q |
44 |
ttaccttgagaatgttttcagtaaggcttgaaggacctcttgatgagaaagatgcaacaatcggtgcaggcctgtatctagaaactaccgttgttggaag |
143 |
Q |
| |
|
||||||||||||||||||| || ||||||||||| ||||| |||||||| ||||| ||||| ||||||||||| ||||||| || | | |||||||||| |
|
|
| T |
16493609 |
ttaccttgagaatgttttctgttaggcttgaagggcctctagatgagaatgatgccacaattggtgcaggcctatatctaggaatttctattgttggaag |
16493510 |
T |
|
| Q |
144 |
aattgtcgcagttggtttcctgtaacagaa |
173 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |
|
|
| T |
16493509 |
aattgttgcagttggtttcctgtaacagaa |
16493480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University