View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2037_low_8 (Length: 395)
Name: NF2037_low_8
Description: NF2037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2037_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 11 - 379
Target Start/End: Original strand, 9411396 - 9411764
Alignment:
| Q |
11 |
atgaaatcagaattatataatttaaattgttaggagttggtgatcaagcaatttatataaattgttgttcaatcatatcttttctttttgatggtgtcca |
110 |
Q |
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| T |
9411396 |
atgaaatcagaattatataatttaaattgttaggagttggtgatcaagcaattcatataaattgctattcaattatatcttt-cttttttatggtgtgcg |
9411494 |
T |
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| Q |
111 |
gaattcaaatcaaagatcttatatttattatgtattatatttaccaactgagttaaat-ttgtgggaaccaatcatatctcttctaatgtaatttaaaag |
209 |
Q |
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| T |
9411495 |
gaattcaaatcaaagatcttacatttattatgcattatatttatcaactgagttaaaacttgtgggaaccaatcatatctcttctaatgtaacttaaaag |
9411594 |
T |
|
| Q |
210 |
attataatgaacggtaaaacaatcttccaaaactgaaaaattactgcatttttatgattgaattcgaacctcgtaatcttcttttttacaaatgttgttg |
309 |
Q |
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| T |
9411595 |
attataatgaacggtaaaacaatcttccaaaactgaaaaagtactgcatttttatgattgaattcgaaccacgtaatcttcttttttacaaatgttgttg |
9411694 |
T |
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| Q |
310 |
actacacaattcatcttgtttggtttgaaacgcttaacacatgcacaaacatactttcacggaacataaa |
379 |
Q |
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| T |
9411695 |
actacacaattcatcttgtttggtttgaaacgcttaacacatgcacaaacatactttcacggaacataaa |
9411764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 10045378 - 10045338
Alignment:
| Q |
126 |
atcttatatttattatgtattatatttaccaactgagttaa |
166 |
Q |
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| T |
10045378 |
atcttatatatattatgtattatctttaccaactgagttaa |
10045338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 41151498 - 41151465
Alignment:
| Q |
136 |
tattatgtattatatttaccaactgagttaaatt |
169 |
Q |
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| T |
41151498 |
tattatgtattatttttaccaactgagttaaatt |
41151465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 11139766 - 11139730
Alignment:
| Q |
130 |
tatatttattatgtattatatttaccaactgagttaa |
166 |
Q |
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| T |
11139766 |
tatatttattatgcattatttttaccaactgagttaa |
11139730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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