View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2037_low_9 (Length: 391)
Name: NF2037_low_9
Description: NF2037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2037_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 7 - 376
Target Start/End: Original strand, 8848916 - 8849282
Alignment:
| Q |
7 |
tcttcatcttcatcttcgattttgaatttttgcttttcacaccttcacaattttcgcagctctgataacaggattctccctcgcaatcgcttctctacca |
106 |
Q |
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| T |
8848916 |
tcttcatcttcatcttcgattttgaatttttgcttttcacaccttcacaattttcgcagctctgataacaggattctcccttgcaatctcttctctacca |
8849015 |
T |
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| Q |
107 |
accttcttatagtcatacccacaatcatgtcgatcagagtatcgatgatctgcacaaaacaactccccacatctacatcgaaatccagccaacccaacct |
206 |
Q |
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| T |
8849016 |
accttcttataatcatacccacaatcatgtcgatcagagtatcgatgatctgcacaaaacaactccccacatctacatcgaaatccagccaacccaacct |
8849115 |
T |
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| Q |
207 |
ttttccgacaaccggagcatctactaacaactctcttcacctcaacaaccgttttttcatcaaccaaatcatgatccgttgaccctttttcnnnnnnnnn |
306 |
Q |
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|| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
8849116 |
ttctccgacaaccggagcatctactaacaaccctcttcacctcagaaaccgttttttcatcaaccaaatcatgatccgttgacccttcttc---ttctga |
8849212 |
T |
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| Q |
307 |
nnnnnnnnnnnnntcttgacgagatctctttggagaccgaacagatctagaagatgaaggtggtaagatt |
376 |
Q |
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| T |
8849213 |
tgatgatgatgattcttgacgagatctcttcggagaccgaacagatctagaagatgaaggtggtaagatt |
8849282 |
T |
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