View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20381_high_15 (Length: 404)

Name: NF20381_high_15
Description: NF20381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20381_high_15
NF20381_high_15
[»] chr5 (18 HSPs)
chr5 (231-387)||(1758778-1758934)
chr5 (169-299)||(29250127-29250257)
chr5 (57-162)||(1758676-1758781)
chr5 (295-387)||(29250415-29250507)
chr5 (1-82)||(27919065-27919146)
chr5 (1-129)||(29168672-29168815)
chr5 (57-129)||(29425844-29425916)
chr5 (1-82)||(29425719-29425803)
chr5 (1-82)||(1758560-1758647)
chr5 (57-129)||(27919187-27919259)
chr5 (328-387)||(38866987-38867046)
chr5 (57-129)||(29567858-29567930)
chr5 (328-387)||(29426336-29426395)
chr5 (1-82)||(29567965-29568052)
chr5 (126-193)||(29567215-29567281)
chr5 (323-381)||(29566638-29566696)
chr5 (323-381)||(29169362-29169420)
chr5 (323-387)||(32432111-32432175)
[»] chr4 (17 HSPs)
chr4 (126-299)||(27520380-27520553)
chr4 (126-299)||(18987200-18987369)
chr4 (296-387)||(27463021-27463112)
chr4 (299-387)||(27483396-27483484)
chr4 (293-387)||(18987740-18987834)
chr4 (299-387)||(27471623-27471711)
chr4 (295-387)||(27519912-27520004)
chr4 (57-129)||(18986615-18986687)
chr4 (57-129)||(27520829-27520901)
chr4 (126-205)||(27471494-27471573)
chr4 (1-82)||(27482552-27482633)
chr4 (1-82)||(18986493-18986577)
chr4 (57-129)||(27482668-27482740)
chr4 (1-80)||(27520941-27521023)
chr4 (57-123)||(27462594-27462660)
chr4 (1-82)||(27462412-27462496)
chr4 (28-82)||(27462499-27462553)
[»] chr3 (3 HSPs)
chr3 (57-129)||(25519019-25519091)
chr3 (1-82)||(25518897-25518984)
chr3 (328-387)||(25520054-25520113)


Alignment Details
Target: chr5 (Bit Score: 153; Significance: 6e-81; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 231 - 387
Target Start/End: Original strand, 1758778 - 1758934
Alignment:
Q  231 gtaaaaatgctaaattttaagacaagaacatactgaagaatgaagatgacatattcaattatagtttcagattaatagtttttatgctgaacaattgatt 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  1758778 gtaaaaatgctaaattttaagacaagaacatactgaagaatgaagatgacatattcaattatagtttcagattaatagtttttatgctgaacaattcatt 1758877  T
Q  331 tttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtg 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1758878 tttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtg 1758934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 169 - 299
Target Start/End: Original strand, 29250127 - 29250257
Alignment:
Q  169 atactcttcctttcaagaattttgtgggcaatatgttagagttagaggctgcatattgaagggtaaaaatgctaaattttaagacaagaacatactgaag 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||| |||||||||||||    
T  29250127 atactcttcctttcaagaattttgtgggcaatatgttagagttagaggctgcatattaaagggtaagattgctaaattttaagacaggaacatactgaag 29250226  T
Q  269 aatgaagatgacatattcaattatagtttca 299  Q
    |||||||||||||||||||||||||||||||    
T  29250227 aatgaagatgacatattcaattatagtttca 29250257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 57 - 162
Target Start/End: Original strand, 1758676 - 1758781
Alignment:
Q  57 ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttttcctttggtttttaatttacagaatct 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1758676 ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttttcctttggtttataatttacagaatct 1758775  T
Q  157 atgtaa 162  Q
    ||||||    
T  1758776 atgtaa 1758781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 295 - 387
Target Start/End: Original strand, 29250415 - 29250507
Alignment:
Q  295 tttcagattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtg 387  Q
    |||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  29250415 tttcagattaattgtttttatgctgaacaattcatttatgtttttgtaggatgaattgggaaatgattataaagaagctgttagtgtggagtg 29250507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 27919065 - 27919146
Alignment:
Q  1 tgggatgaagttatggaagacgaggaagaaaatgaaaaagaacaagaagaagagccctcttttgttgctgaagatgaaaaag 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  || ||| |||||||||||||    
T  27919065 tgggatgaagttatggaagacgaggaagaaaatgaaaaagaacaagaacaagagccctctcctgatgccgaagatgaaaaag 27919146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 29168672 - 29168815
Alignment:
Q  1 tgggatgaagttatggaagacgaggaagaaaatgaaaaagaacaagaa------gaagagccctcttttg---------ttgctgaagatgaaaaagtca 85  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||      ||||||| |||| |||         |||||||||||||||| ||||    
T  29168672 tgggatgaagtcatggaagacgaggaagaaaatgaaaaagaacaagaacaagatgaagagcactctcttgactctcttgttgctgaagatgaaaatgtca 29168771  T
Q  86 tatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt 129  Q
    ||||||||||  ||||||||||||||| ||||||||||||||||    
T  29168772 tatctcaggtatatgtcttgaatcttcgactgtgattgtctttt 29168815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 29425844 - 29425916
Alignment:
Q  57 ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt 129  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||    
T  29425844 ctcttttgttgctgatgatgaaaaagtcatatctcaggtacatgtcttgaatattcagctgtgattgtctttt 29425916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 29425719 - 29425803
Alignment:
Q  1 tgggatgaagttatggaagacgaggaagaaaatgaaaaagaa---caagaagaagagccctcttttgttgctgaagatgaaaaag 82  Q
    |||||||||||||||||| |||||||||||||||||||||||   ||||||||||||||||||  || |||||||||||||||||    
T  29425719 tgggatgaagttatggaaaacgaggaagaaaatgaaaaagaacaccaagaagaagagccctctcctgatgctgaagatgaaaaag 29425803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 1758560 - 1758647
Alignment:
Q  1 tgggatgaagttatggaagacgaggaagaaaatgaaa------aagaacaagaagaagagccctcttttgttgctgaagatgaaaaag 82  Q
    |||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||  || |||||||||||||||||    
T  1758560 tgggatgaagttatggaagacgaggaagaaaatgaaaaagaacaagaacaagaagaagagccctctcctgatgctgaagatgaaaaag 1758647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 27919187 - 27919259
Alignment:
Q  57 ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt 129  Q
    ||||||| || |||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||    
T  27919187 ctcttttattactgaagatgaaaaagtcatatctcaggtacatgtcttgaatcttcgactgtgattgactttt 27919259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 328 - 387
Target Start/End: Complemental strand, 38867046 - 38866987
Alignment:
Q  328 atttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtg 387  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  38867046 atttatgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtg 38866987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 29567930 - 29567858
Alignment:
Q  57 ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt 129  Q
    |||| ||||||||||||||||||||||||||||||||||  ||||||||||||||  ||||||| ||||||||    
T  29567930 ctctcttgttgctgaagatgaaaaagtcatatctcaggtatatgtcttgaatcttggactgtgactgtctttt 29567858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 328 - 387
Target Start/End: Original strand, 29426336 - 29426395
Alignment:
Q  328 atttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtg 387  Q
    |||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  29426336 atttatgtttttgtaggatgaatcgggaaatgattatgaagaagctgttagtgtggagtg 29426395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 29568052 - 29567965
Alignment:
Q  1 tgggatgaagttatggaagacgaggaagaaaatgaaa------aagaacaagaagaagagccctcttttgttgctgaagatgaaaaag 82  Q
    ||||||||||||||||||||| |||||||||||||||      |||||||||||||||||||||||  || || ||||||||||||||    
T  29568052 tgggatgaagttatggaagacaaggaagaaaatgaaagcgaacaagaacaagaagaagagccctctcctgatgttgaagatgaaaaag 29567965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 126 - 193
Target Start/End: Complemental strand, 29567281 - 29567215
Alignment:
Q  126 tttttcctttggtttttaatttacagaatctatgtaagaataaatactcttcctttcaagaattttgt 193  Q
    |||||||||| ||||||| ||||| | ||||| |||||||||||||||||||||||||||||||||||    
T  29567281 tttttccttttgttttta-tttaccggatctaggtaagaataaatactcttcctttcaagaattttgt 29567215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 323 - 381
Target Start/End: Complemental strand, 29566696 - 29566638
Alignment:
Q  323 aattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgt 381  Q
    |||| |||| |||||||| |||||||||||| |||||||||||||||||||||||||||    
T  29566696 aattcatttatgtttttgcaggatgaattgggaaatgattatgaagaagctgttagtgt 29566638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 323 - 381
Target Start/End: Original strand, 29169362 - 29169420
Alignment:
Q  323 aattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgt 381  Q
    |||| |||| || |||||||||||||||||| ||||||||||||||||||||| |||||    
T  29169362 aattcatttatgattttgtaggatgaattgggaaatgattatgaagaagctgtcagtgt 29169420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 32432111 - 32432175
Alignment:
Q  323 aattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtg 387  Q
    |||| |||||||| |||||||||||  |||| | | ||||||||||||||||||||||| |||||    
T  32432111 aattcatttttgtgtttgtaggatggtttggcagaagattatgaagaagctgttagtgtagagtg 32432175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 138; Significance: 5e-72; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 126 - 299
Target Start/End: Complemental strand, 27520553 - 27520380
Alignment:
Q  126 tttttcctttggtttttaatttacagaatctatgtaagaataaatactcttcctttcaagaattttgtgggcaatatgttagagttagaggctgcatatt 225  Q
    |||||||||||||||||||||||| ||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |  ||||     
T  27520553 tttttcctttggtttttaatttaccgaatctaggtaagaataaacactcttcttttcaagaattttgtgggcaatatgttagagttagaggttttatatc 27520454  T
Q  226 gaagggtaaaaatgctaaattttaagacaagaacatactgaagaatgaagatgacatattcaattatagtttca 299  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27520453 gaagggtaaaaatgctaaattttaagacaggaacatactgaagaatgaagatgacatattcaattatagtttca 27520380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 126 - 299
Target Start/End: Original strand, 18987200 - 18987369
Alignment:
Q  126 tttttcctttggtttttaatttacagaatctatgtaagaataaatactcttcctttcaagaattttgtgggcaatatgttagagttagaggctgcatatt 225  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  18987200 tttttcctttggtttttaatttaccgaatctaggtaagaataaatactcttcctttcaagaattttgtgggaagtatgttagagttagaggctgcatatt 18987299  T
Q  226 gaagggtaaaaatgctaaattttaagacaagaacatactgaagaatgaagatgacatattcaattatagtttca 299  Q
    ||||||||||||||||||||||||||||||||||||||||||    |||||||| |||||||||||||||||||    
T  18987300 gaagggtaaaaatgctaaattttaagacaagaacatactgaa----gaagatgatatattcaattatagtttca 18987369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 296 - 387
Target Start/End: Original strand, 27463021 - 27463112
Alignment:
Q  296 ttcagattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtg 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27463021 ttcagattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtg 27463112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 299 - 387
Target Start/End: Original strand, 27483396 - 27483484
Alignment:
Q  299 agattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtg 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27483396 agattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtg 27483484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 293 - 387
Target Start/End: Original strand, 18987740 - 18987834
Alignment:
Q  293 agtttcagattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtg 387  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  18987740 agtttcagattaatagtttttatgctgaacaattgttttttgtttttgtaggatcaattgggaaatgattatgaagaagctgttagtgtggagtg 18987834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 299 - 387
Target Start/End: Original strand, 27471623 - 27471711
Alignment:
Q  299 agattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtg 387  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27471623 agattaatagtttttatgctgaacaattgatttttatttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtg 27471711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 295 - 387
Target Start/End: Complemental strand, 27520004 - 27519912
Alignment:
Q  295 tttcagattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtg 387  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27520004 tttcagattaatagtttttatgctgaacagttcatttttgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtg 27519912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 18986615 - 18986687
Alignment:
Q  57 ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt 129  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  18986615 ctcttttgttgctaaagatgaaaaagtcatatctcaggtacatgtcttgaatcttcaactgtgattgtctttt 18986687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 27520901 - 27520829
Alignment:
Q  57 ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt 129  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  27520901 ctcttttgttgctgaagatgaaaaagtcatatcgcaggtacatgtcttgaatcttcaactgtgattgtctttt 27520829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 126 - 205
Target Start/End: Original strand, 27471494 - 27471573
Alignment:
Q  126 tttttcctttggtttttaatttacagaatctatgtaagaataaatactcttcctttcaagaattttgtgggcaatatgtt 205  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  27471494 tttttcgtttggtttttaatttactgaatctaggtaagaataaatactcttcctttcatgaattttgtgggcaatatgtt 27471573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 27482552 - 27482633
Alignment:
Q  1 tgggatgaagttatggaagacgaggaagaaaatgaaaaagaacaagaagaagagccctcttttgttgctgaagatgaaaaag 82  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||  || |||||||||||||||||    
T  27482552 tgggatgaagttatggaagtcgaggaagaaaatgaaaaagaccaagaagaagagccctctcctgatgctgaagatgaaaaag 27482633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 18986493 - 18986577
Alignment:
Q  1 tgggatgaagttatggaagacgaggaagaaaatgaaa---aagaacaagaagaagagccctcttttgttgctgaagatgaaaaag 82  Q
    |||||||||||||||||||||||||||||||||||||   || ||||||||||||||||||||  || |||||||||||||||||    
T  18986493 tgggatgaagttatggaagacgaggaagaaaatgaaaaggaacaacaagaagaagagccctctcctgatgctgaagatgaaaaag 18986577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 27482668 - 27482740
Alignment:
Q  57 ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt 129  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||| |||||||| ||||    
T  27482668 ctcttttgttgctgaagatgaaaaagtcatatctcaggtacatatcttgaatctttaacggtgattgtgtttt 27482740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 27521023 - 27520941
Alignment:
Q  1 tgggatgaagttatggaagacgaggaagaaaatgaaaaaga---acaagaagaagagccctcttttgttgctgaagatgaaaa 80  Q
    ||||||||||||||||||| |||||||||||||||||||||   |||||||||||||||||||  || |||||||||||||||    
T  27521023 tgggatgaagttatggaagtcgaggaagaaaatgaaaaagaacaacaagaagaagagccctctcctgatgctgaagatgaaaa 27520941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 27462594 - 27462660
Alignment:
Q  57 ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattg 123  Q
    |||||||||| |||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||    
T  27462594 ctcttttgtttctgaagatgaaaaagtcatatctcaggtacatatcttgaatattcaactgtgattg 27462660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 27462412 - 27462496
Alignment:
Q  1 tgggatgaagttatggaagacgaggaagaaaatgaaaaagaac---aagaagaagagccctcttttgttgctgaagatgaaaaag 82  Q
    ||||||||||||||||||| || ||||||||||||||||||||   |||||||||||||||||  || |||||||||| ||||||    
T  27462412 tgggatgaagttatggaagtcggggaagaaaatgaaaaagaacaagaagaagaagagccctctcctgatgctgaagataaaaaag 27462496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 27462499 - 27462553
Alignment:
Q  28 gaaaatgaaaaagaacaagaagaagagccctcttttgttgctgaagatgaaaaag 82  Q
    ||||| ||| |||||||||||||||| ||||||  || |||||||||||||||||    
T  27462499 gaaaaagaacaagaacaagaagaagaaccctctcctgatgctgaagatgaaaaag 27462553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 25519019 - 25519091
Alignment:
Q  57 ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt 129  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||  ||||||||||||||||    
T  25519019 ctcttttgttgctgaagatgaaaaagtcatatctcaggtatatgtcttgaatcttggactgtgattgtctttt 25519091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 25518897 - 25518984
Alignment:
Q  1 tgggatgaagttatggaagacgaggaagaaaatgaaa------aagaacaagaagaagagccctcttttgttgctgaagatgaaaaag 82  Q
    |||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||  || |||||||||||||||||    
T  25518897 tgggatgaagttatggaagacgaggaagaaaatgaaaaagaacaagaacaagaagaagagccctctcctgatgctgaagatgaaaaag 25518984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 328 - 387
Target Start/End: Original strand, 25520054 - 25520113
Alignment:
Q  328 atttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtg 387  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  25520054 atttatgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtagagtg 25520113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University