View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20381_high_16 (Length: 392)
Name: NF20381_high_16
Description: NF20381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20381_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 15 - 375
Target Start/End: Complemental strand, 49871443 - 49871084
Alignment:
| Q |
15 |
catagggaccatgttactattattggtgatggtcccaaaaagaccatatttactggtagcaaaagctatggtgatggtgtgcagacttacaataccgcaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49871443 |
catagggaccatgttactattattggtgatggtcccaaaaagaccatatttactggtagcaaaagctatggtgatggtgtgcagacttacaataccgcaa |
49871344 |
T |
|
| Q |
115 |
cattcagtaagttactaatgcaatgtttaatatttagcatctgttcctaagttgtaagttgtaatgatcgatttgttattaatttgacaggtgtgaactc |
214 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
49871343 |
cattcagtaagttactaatgcaatgattaatatttagcatctgttcctaagttgtaagttgtaatgatcgatttgttattaa-ttgacaggtgtgaactc |
49871245 |
T |
|
| Q |
215 |
tgcccatttcacggcctttaacgtcggattcgagaactcagccggtgccgcaaagcatcaagcagtggccctccgtgtaacagcagacaaagcattgttc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49871244 |
tgcccatttcacggcctttaacgtcggattcgagaactcagccggtgccgcaaagcatcaagcagtggccctccgtgtaacagcagacaaagcattgttc |
49871145 |
T |
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| Q |
315 |
tacaactgcgaaatgaacggttaccaagatacactctacacacaatccaaaagacaattct |
375 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49871144 |
tacaactgtgaaatgaacggttaccaagatacactctacacacaatccaaaagacaattct |
49871084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 375
Target Start/End: Complemental strand, 49865511 - 49865147
Alignment:
| Q |
16 |
atagggaccatgttactattattggtgatggtcccaaaaagaccatatttactggtagcaaaagctatggtgatggtgtgcagacttacaataccgcaac |
115 |
Q |
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||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
49865511 |
atagggaccatgttactattattggcgatggtcccacaaagaccatatttactggcagcaaaagctatgctgatggtgtgcagacttacaataccgcaac |
49865412 |
T |
|
| Q |
116 |
attcagtaagttacta----------atgcaatgtttaatatttagcatctgttcctaagttgtaagttgtaatgatcgatttgttattaatttgacagg |
205 |
Q |
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|||| ||||||||||| |||||||||||||||| | |||| | || ||||||||||| |||| |||||||||||| | |||| |
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| T |
49865411 |
attcggtaagttactactcaattttaatgcaatgtttaatat---ggatctctaaaaaa-ttgtaagttgtgtatatcgggttgttattaattgg-cagg |
49865317 |
T |
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| Q |
206 |
tgtgaactctgcccatttcacggcctttaacgtcggattcgagaactcagccggtgccgcaaagcatcaagcagtggccctccgtgtaacagcagacaaa |
305 |
Q |
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||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
49865316 |
tgtgaactctgcccatttcaccgccttgaacgtcggatttgagaactcagccggtgccgcaaagcaccaagcagtggccctccgtgtaacagcagacaaa |
49865217 |
T |
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| Q |
306 |
gcattgttctacaactgcgaaatgaacggttaccaagatacactctacacacaatccaaaagacaattct |
375 |
Q |
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||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49865216 |
gcattgttctacaactgtcaaatggacggttaccaagatacactctacacacaatccaaaagacaattct |
49865147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 351
Target Start/End: Original strand, 13960326 - 13960407
Alignment:
| Q |
270 |
catcaagcagtggccctccgtgtaacagcagacaaagcattgttctacaactgcgaaatgaacggttaccaagatacactct |
351 |
Q |
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||||||||||| || ||||| |||||||||||||||||| | |||||||||||| |||| | |||||||||| ||||||| |
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| T |
13960326 |
catcaagcagttgcactccgagtaacagcagacaaagcaatcttctacaactgccaaatagatggttaccaagcaacactct |
13960407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 353
Target Start/End: Original strand, 13967491 - 13967573
Alignment:
| Q |
271 |
atcaagcagtggccctccgtgtaacagcagacaaagcattgttctacaactgcgaaatgaacggttaccaagatacactctac |
353 |
Q |
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|||||||||| |||||||| ||||||||||| ||||| | ||| ||||||| ||||| |||||| |||||| ||||||||| |
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| T |
13967491 |
atcaagcagttgccctccgagtaacagcagatcaagcaatattccacaactgtcaaatggacggtttccaagacacactctac |
13967573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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