View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20381_high_17 (Length: 390)
Name: NF20381_high_17
Description: NF20381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20381_high_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 385
Target Start/End: Complemental strand, 42305384 - 42305019
Alignment:
| Q |
19 |
actcgtggacttgcaattttaattcccagattgtaatctttataaaatgaaggaggctaaattggttgaatctccgtcttagtatggcatagtcaagaga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||| |
|
|
| T |
42305384 |
actcgtggacttgcaattttaattcccagattgtaatctttataaaatgaaggaggctaaattggttgattctccgtcttaatacggcatagtcaagaga |
42305285 |
T |
|
| Q |
119 |
agtgctttccgacacataattgctagaggtgattgagttggcaatttcttcaatgcttgttttggaaccctttcaagttcacgtgctaattcttcactac |
218 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42305284 |
agtgcttttcgacacataattgctggaggtgattgagttggcaatttcttcaatgcttgttttggaaccctttcaagttcacgtgctaattcttcactac |
42305185 |
T |
|
| Q |
219 |
caacattggaaattacttgaaaaaatataccaattggatcggagattagaatggatgtaaggtgtaacggagttatttcagcatttcctaagcttattga |
318 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42305184 |
caacattgg-aattacttgaaaaagtataccaattggattggagattagaatggatgtaaggtgtaacggagttatttcagcatttcctaagcttattga |
42305086 |
T |
|
| Q |
319 |
tagtctttttagcactaacaagttcctcatacgccttgcaagtaaaatggtctcgattcatctctct |
385 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||| ||||| |
|
|
| T |
42305085 |
tagtctttttagcactaacaagttcctcttactccttgcaagtaaaatggtcttgattcatttctct |
42305019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 108 - 345
Target Start/End: Original strand, 42304443 - 42304675
Alignment:
| Q |
108 |
tagtcaagagaagtgctttccgacacataat-tgctagaggtgattgagttggcaatttcttcaatgcttgttttg-gaaccctttcaagttcacgtgct |
205 |
Q |
| |
|
||||||||||||||||||| ||| ||||||| |||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42304443 |
tagtcaagagaagtgcttttcgatacataatctgctggaggtgactgagttggcaatttcttcaatgcttgtttttagaaccctttcaagttcacgtgct |
42304542 |
T |
|
| Q |
206 |
aattcttcactaccaacattggaaattacttgaaaaaatataccaattggatcggagattagaatggatgtaaggtgtaacggagttatttcagcatttc |
305 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||| ||||||| ||||| ||||| ||||||||||||| ||||| ||| |||||||| ||| ||| || |
|
|
| T |
42304543 |
aattcttcaccaccaacattggaacttacttggaaaaata-accaaatggat-----attagaatggatgcaaggtataagggagttatctcaacatgtc |
42304636 |
T |
|
| Q |
306 |
ctaagcttattgatagtctttttagcactaacaagttcct |
345 |
Q |
| |
|
|||| ||||||| ||||| | ||||||||||||||||||| |
|
|
| T |
42304637 |
ctaaacttattgctagtc-tcttagcactaacaagttcct |
42304675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 296
Target Start/End: Complemental strand, 45465916 - 45465764
Alignment:
| Q |
144 |
gaggtgattgagttggcaatttcttcaatgcttgttttggaaccctttcaagttcacgtgctaattcttcactaccaacattggaaattacttgaaaaaa |
243 |
Q |
| |
|
|||| ||||||| ||| | |||||| ||||||||||| ||| | ||||| |||||||| ||||||||| | ||||||| |||||| |||| || || |
|
|
| T |
45465916 |
gaggagattgagatggaagtttctttaatgcttgtttcaaaacacgttcaacggcacgtgctgattcttcaccagcaacatttgaaattgcttggaagaa |
45465817 |
T |
|
| Q |
244 |
tataccaattggatcggagattagaatggatgtaaggtgtaacggagttattt |
296 |
Q |
| |
|
||||| | ||||| || | |||||| |||| ||||||||| ||||| |||| |
|
|
| T |
45465816 |
aataccgttaggatcagaaactagaattgatgcaaggtgtaagggagtgattt |
45465764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University