View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20381_high_22 (Length: 333)
Name: NF20381_high_22
Description: NF20381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20381_high_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 79 - 223
Target Start/End: Complemental strand, 45150697 - 45150553
Alignment:
| Q |
79 |
ataagtactctagaatagatgtatggaaccaatttgatgaagctgaattatggcaaggaagaaactttatggaaaggaatgtcatgtggcatatgatgct |
178 |
Q |
| |
|
||||||||||||||| |||| | || ||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45150697 |
ataagtactctagaacagatagacggctccaatttgatgaagctgaactacagcaagaaagaaactttatggaaaggaatgtcatgtggcatatgatgct |
45150598 |
T |
|
| Q |
179 |
attaacttgtcctaccctcataaacaacacacagcaacatccaaa |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45150597 |
gttaacttgtcctaccctcataaacaacacacaacaacatccaaa |
45150553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 107 - 186
Target Start/End: Complemental strand, 45303767 - 45303688
Alignment:
| Q |
107 |
ccaatttgatgaagctgaattatggcaaggaagaaactttatggaaaggaatgtcatgtggcatatgatgctattaactt |
186 |
Q |
| |
|
|||||| |||||||| |||||| |||| |||||||||||||||||||||||| || |||||||||||||| ||||||| |
|
|
| T |
45303767 |
ccaattcgatgaagcagaattacagcaaagaagaaactttatggaaaggaatgccacgtggcatatgatgcagttaactt |
45303688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 279
Target Start/End: Complemental strand, 45150474 - 45150445
Alignment:
| Q |
250 |
ccacagtaacaactacactaatggacccag |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
45150474 |
ccacagtaacaactacactaatggacccag |
45150445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 291
Target Start/End: Complemental strand, 45303654 - 45303613
Alignment:
| Q |
250 |
ccacagtaacaactacactaatggacccagaactcatcaaga |
291 |
Q |
| |
|
||||||||||||||| ||| ||||||||| |||||||||||| |
|
|
| T |
45303654 |
ccacagtaacaactagacttatggacccaaaactcatcaaga |
45303613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 1079821 - 1079876
Alignment:
| Q |
33 |
tgttacttggactctaagctatcctctatattagtatcatgtaataataagtactc |
88 |
Q |
| |
|
||||||||||| ||||||||||| |||||| |||||||||||||||| |||||||| |
|
|
| T |
1079821 |
tgttacttggagtctaagctatcttctatactagtatcatgtaataacaagtactc |
1079876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University