View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20381_high_35 (Length: 289)
Name: NF20381_high_35
Description: NF20381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20381_high_35 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 39142974 - 39142738
Alignment:
| Q |
13 |
aatatttgagttccatatgacaccttttgtcatcatcttcaaaccgtaaaacatcaaccaaaagagtaaagagtttatgcatcaatatgaatcaattgct |
112 |
Q |
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| T |
39142974 |
aatatttgagttccatatgacaccttttgtcatcatcttcaaaccgtaaaacatcaaccaaaagagtaaagagtttatgcatcaatatgaatcaattgct |
39142875 |
T |
|
| Q |
113 |
ctatctataaagaacctcaacacattttcactaattcagacttcaaattcataatagccttagcaaaatttaaaacaaaagtgaaaagtagatagtgtcg |
212 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||| |||| |
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| T |
39142874 |
ctatctataaagaacctcgacacattttcactaattcagacttcaaattcataatagccttagcaaaatttaaaacaaaagcggaaagtacataacgtcg |
39142775 |
T |
|
| Q |
213 |
tttatttttcatattttctgttttaattttcacttca |
249 |
Q |
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| T |
39142774 |
tttatttttcatattttctgttttaattttcacttca |
39142738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 123 - 270
Target Start/End: Complemental strand, 39138222 - 39138075
Alignment:
| Q |
123 |
agaacctcaacacattttcactaattcagacttcaaattcataatagccttagcaaaatttaaaacaaaagtgaaaagtagatagtgtcgtttatttttc |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39138222 |
agaacctcaacacattttcactaattcagacttcaaattcataatagccttagcaaaatttaaaacaaaagtgaaaagtagatagtgtcgtttatttttc |
39138123 |
T |
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| Q |
223 |
atattttctgttttaattttcacttcagaatatacatccaatgcatcc |
270 |
Q |
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| T |
39138122 |
atattttttgttttaattttcacttcagaatatacattcaatgcatcc |
39138075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 39134577 - 39134465
Alignment:
| Q |
13 |
aatatttgagttccatatgacaccttttgtcatcatcttcaaaccgtaaaacatcaaccaaaagagtaaagagtttatgcatcaatatgaatcaattgct |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
39134577 |
aatatttgagttccatatgacaccttttgtcatcatcttcaaactgtaaaacatcaaccaaaagagtaaagagtttatgcattaatatgaatcaattgtt |
39134478 |
T |
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| Q |
113 |
ctatctataaaga |
125 |
Q |
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| T |
39134477 |
ctatctataaaga |
39134465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 41 - 125
Target Start/End: Complemental strand, 39138352 - 39138270
Alignment:
| Q |
41 |
gtcatcatcttcaaaccgtaaaacatcaaccaaaagagtaaagagtttatgcatcaatatgaatcaattgctctatctataaaga |
125 |
Q |
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||||||||||||||||||||||||||| ||||||| ||| |||||||||| || ||| ||||||||||| |||||||||||||| |
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| T |
39138352 |
gtcatcatcttcaaaccgtaaaacatcgaccaaaatagt--agagtttatggattaatgtgaatcaattgttctatctataaaga |
39138270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 247
Target Start/End: Original strand, 34633043 - 34633077
Alignment:
| Q |
213 |
tttatttttcatattttctgttttaattttcactt |
247 |
Q |
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|||||||||||||||||||| |||||||||||||| |
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| T |
34633043 |
tttatttttcatattttctgatttaattttcactt |
34633077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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