View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20381_high_42 (Length: 245)
Name: NF20381_high_42
Description: NF20381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20381_high_42 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 5160205 - 5159976
Alignment:
| Q |
1 |
gtattgatatgaaagaaaagtaggaatgacactttctttgtccttgtttaggttgcaattttgaagaatgagggacttcaattgaaatttaggaaaccac |
100 |
Q |
| |
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||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
5160205 |
gtattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttaggaaaccac |
5160106 |
T |
|
| Q |
101 |
tttattttttcagtttcaatgtgtgctcc---attactttgtgatgaaatatatagcacttgaagattggtgtgattagccaaagtggtcaatgaaaatg |
197 |
Q |
| |
|
||| |||||||||||||||||| | |||| ||| ||| ||||||||||||||| || | |||||||| ||||||||||||||| |||||||||||| |
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| T |
5160105 |
tttgttttttcagtttcaatgtctactccaatattgttttttgatgaaatatatagaacctcaagattggaatgattagccaaagtgctcaatgaaaatg |
5160006 |
T |
|
| Q |
198 |
atccttgcatgtaatttccatagaaggata |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
5160005 |
atccttgcatgtaatttccatagaaggata |
5159976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 2 - 227
Target Start/End: Complemental strand, 5195846 - 5195618
Alignment:
| Q |
2 |
tattgatatgaaagaaaagtaggaatgacactttctttgtccttgtttaggttgcaattttgaagaatgagggacttcaattgaaatttaggaaaccact |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| || ||| || |||||||||||||||||||||||||||| |
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|
| T |
5195846 |
tattgatatgaaagaaaagtaggaatgacacttccttcgtccttgtttaggttgcaatttctaacaataagtgacttcaattgaaatttaggaaaccact |
5195747 |
T |
|
| Q |
102 |
ttattttttcagtttcaatgtgtgctcc---attactttgtgatgaaatatatagcacttgaagattggtgtgattagccaaagtggtcaatgaaaatga |
198 |
Q |
| |
|
|| |||||||||||||||||| | |||| ||| ||| ||||||||||||||| || | |||||||| ||||||||||||||| ||||||||||||| |
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| T |
5195746 |
ttgttttttcagtttcaatgtctactccaatattgttttttgatgaaatatatagaacctcaagattggaatgattagccaaagtgctcaatgaaaatga |
5195647 |
T |
|
| Q |
199 |
tccttgcatgtaatttccatagaaggata |
227 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
5195646 |
tccttgcatgtaatttccatagaaggata |
5195618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 2 - 227
Target Start/End: Complemental strand, 5214009 - 5213784
Alignment:
| Q |
2 |
tattgatatgaaagaaaagtaggaatgacactttctttgtccttgtttaggttgcaattttgaagaatgagggacttcaattgaaatttaggaaaccact |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||| | ||||||||||||||| || ||||||| |
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|
| T |
5214009 |
tattgatatgaaagaaaagtaggaatgacacttcctttgtccttgtttaagttgcaatttctaagaatgagtgtcttcaattgaaatttgggtaaccact |
5213910 |
T |
|
| Q |
102 |
ttattttttcagtttcaatgtgtgctccattactttgtgatgaaatatatagcacttgaagattggtgtgattagccaaagtggtcaatgaaaatgatcc |
201 |
Q |
| |
|
|| | |||||||||||||||| ||| ||| | |||||||||||||||||||| || ||||||| |||||||||||||||| |||||||||||||||| |
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|
| T |
5213909 |
ttgtcttttcagtttcaatgtttgcaccaatgctttgtgatgaaatatatagatgctggagattggagtgattagccaaagtgctcaatgaaaatgatcc |
5213810 |
T |
|
| Q |
202 |
ttgcatgtaatttccatagaaggata |
227 |
Q |
| |
|
|||||||||||||||| ||| ||||| |
|
|
| T |
5213809 |
ttgcatgtaatttccaaagagggata |
5213784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 2 - 221
Target Start/End: Complemental strand, 5173120 - 5172898
Alignment:
| Q |
2 |
tattgatatgaaagaaaagtaggaatgacactttctttgtccttgtttaggttgcaattttgaagaatgagggacttcaattgaaatttaggaaaccact |
101 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
5173120 |
tattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagggacttcaattgaaatttaggaaaccact |
5173021 |
T |
|
| Q |
102 |
ttattttttcagtttcaatgtgtgctccattac---tttgtgatgaaatatatagcacttgaagattggtgtgattagccaaagtggtcaatgaaaatga |
198 |
Q |
| |
|
|| |||||||||||||||||||| ||||| | | ||| |||||||||| ||| |||||||||| ||||||||||||| || | | ||||||||| |
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|
| T |
5173020 |
ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatgtagatgctgaagattggagtgattagccaaaatgataagtgaaaatga |
5172921 |
T |
|
| Q |
199 |
tccttgcatgtaatttccataga |
221 |
Q |
| |
|
|||||||||||||||| |||||| |
|
|
| T |
5172920 |
tccttgcatgtaattttcataga |
5172898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 2 - 227
Target Start/End: Original strand, 4856882 - 4857107
Alignment:
| Q |
2 |
tattgatatgaaagaaaagtaggaatgacactttctttgtccttgtttaggttgcaattttgaagaatgagggacttcaattgaaatttaggaaaccact |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||| ||||||||| | ||||||||||||||| |||||||||| |
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|
| T |
4856882 |
tattgatatgaaagaaaagtaggaatgacacttccttcgtccatgtttaggttgcaatttctaagaatgagtgtcttcaattgaaatttgggaaaccact |
4856981 |
T |
|
| Q |
102 |
ttattttttcagtttcaatgtgtgctccattactttgtgatgaaatatatagcacttgaagattggtgtgattagccaaagtggtcaatgaaaatgatcc |
201 |
Q |
| |
|
|| | ||||||||||||||| | ||||| | ||| | |||||||||||| |||||||| | ||||||||||||||||||||||||||||||||| |
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|
| T |
4856982 |
ttgtcttttcagtttcaatgagaactccactgttttccggtgaaatatatagatgctgaagatttgagtgattagccaaagtggtcaatgaaaatgatcc |
4857081 |
T |
|
| Q |
202 |
ttgcatgtaatttccatagaaggata |
227 |
Q |
| |
|
|||||||||||||||||||| ||||| |
|
|
| T |
4857082 |
ttgcatgtaatttccatagatggata |
4857107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 2 - 227
Target Start/End: Complemental strand, 5182449 - 5182224
Alignment:
| Q |
2 |
tattgatatgaaagaaaagtaggaatgacactttctttgtccttgtttaggttgcaattttgaagaatgagggacttcaattgaaatttaggaaaccact |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||| ||||||||| | ||||||||||||||| |||||||||| |
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|
| T |
5182449 |
tattgatatgaaagaaaagtaggaatgacacctcctttctccttgtttaggttgcaatttctaagaatgagtgtcttcaattgaaatttgggaaaccact |
5182350 |
T |
|
| Q |
102 |
ttattttttcagtttcaatgtgtgctccattactttgtgatgaaatatatagcacttgaagattggtgtgattagccaaagtggtcaatgaaaatgatcc |
201 |
Q |
| |
|
|| | ||||||||||||||| | ||||| | ||| | |||||||||||| |||||||| | |||||||||||||||| |||||||||||||||| |
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|
| T |
5182349 |
ttgtcttttcagtttcaatgagaactccactgttttccggtgaaatatatagatgctgaagatttgagtgattagccaaagtgctcaatgaaaatgatcc |
5182250 |
T |
|
| Q |
202 |
ttgcatgtaatttccatagaaggata |
227 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
5182249 |
ttgcatgtaatttccatagaaggata |
5182224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 4842405 - 4842627
Alignment:
| Q |
2 |
tattgatatgaaagaaaagtaggaatgacactttctttgtccttgtttaggttgcaattttgaagaatgagggacttcaattgaaatttaggaaaccact |
101 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||| | | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4842405 |
tattgataagaaagaaaagtaggaatgacacttcctttcttcatgtttaggttgcaatttctaagaatgagggacttcaattgaaatttaggaaaccact |
4842504 |
T |
|
| Q |
102 |
ttattttttcagtttcaatgtgtgctccattac---tttgtgatgaaatatatagcacttgaagattggtgtgattagccaaagtggtcaatgaaaatga |
198 |
Q |
| |
|
|| |||||||||||||||||||| ||||| ||| ||| |||||||||||||| |||||||||| ||||||||||||| || | | ||||||||| |
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|
| T |
4842505 |
ttgttttttcagtttcaatgtgtactccaatactgtttttagatgaaatatatagatgctgaagattggagtgattagccaaattgataagtgaaaatga |
4842604 |
T |
|
| Q |
199 |
tccttgcatgtaatttccataga |
221 |
Q |
| |
|
|||||||||||||||| |||||| |
|
|
| T |
4842605 |
tccttgcatgtaattttcataga |
4842627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 132
Target Start/End: Complemental strand, 7142381 - 7142254
Alignment:
| Q |
4 |
ttgatatgaaagaaaagtaggaatgacactttctttgtccttgtttaggttgcaattttgaagaatgagggacttcaattgaaatttaggaaaccacttt |
103 |
Q |
| |
|
||||||||||| |||| ||||||||||| || |||||||| ||||| |||||||||||| || || || | | | ||||||| |||||||||||||| |
|
|
| T |
7142381 |
ttgatatgaaaaaaaactaggaatgacatttcctttgtccatgttttggttgcaatttttaa-cataagtgtatgtagttgaaatctaggaaaccacttt |
7142283 |
T |
|
| Q |
104 |
attttttcagtttcaatgtgtgctccatt |
132 |
Q |
| |
|
| ||||||||||||| |||| ||||||| |
|
|
| T |
7142282 |
gtattttcagtttcaacgtgtactccatt |
7142254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 214
Target Start/End: Complemental strand, 5202887 - 5202773
Alignment:
| Q |
100 |
ctttattttttcagtttcaatgtgtgctccattactttgtgatgaaatatatagcacttgaagattggtgtgattagccaaagtggtcaatgaaaatgat |
199 |
Q |
| |
|
|||| |||||| ||||||||||||| ||||| | |||| ||| ||||||||||| | ||||| || |||||||||||||||| | | |||||||| | |
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|
| T |
5202887 |
ctttgttttttaagtttcaatgtgttctccaatgctttctgaggaaatatatagatcctgaagcgtgaagtgattagccaaagtgcttactgaaaatggt |
5202788 |
T |
|
| Q |
200 |
ccttgcatgtaattt |
214 |
Q |
| |
|
|||||| ||| |||| |
|
|
| T |
5202787 |
ccttgcgtgtgattt |
5202773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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