View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20381_high_47 (Length: 222)
Name: NF20381_high_47
Description: NF20381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20381_high_47 |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 32631816 - 32631615
Alignment:
| Q |
16 |
catgtataagatatatttagaggggatgtgtagctcacttggttgagctaagagattaaaattgttaaaggtttatggttcaaatccttataattgataa |
115 |
Q |
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| T |
32631816 |
catgtgtaagatatatttagaggggatgtgtagctcatttggttgagctaagagattaaaagtgttaaaggttcatggttcaaatccttataattgataa |
32631717 |
T |
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| Q |
116 |
aatatgaacctaacaattgacatattaacatttgtcattnnnnnnnncttttgatacgatctaattttatgcggtttaatttggatatattcttcgacat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| || || ||||| |
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| T |
32631716 |
aatatgaacctaacaattgacatattaacatttgtcattaaaaaaaacttttgatacaatctaattttatgcggtttaatttggatatgtttttggacat |
32631617 |
T |
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| Q |
216 |
cc |
217 |
Q |
| |
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|| |
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| T |
32631616 |
cc |
32631615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 6227750 - 6227808
Alignment:
| Q |
37 |
ggggatgtgtagctcacttggttgagctaagagattaaaattgttaaaggtttatggtt |
95 |
Q |
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| T |
6227750 |
ggggatggatagctcacttggttgagctaagatattaaaatagttaaagatttaaggtt |
6227808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 3594581 - 3594618
Alignment:
| Q |
38 |
gggatgtgtagctcacttggttgagctaagagattaaa |
75 |
Q |
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| T |
3594581 |
gggatgagtagctcacttggttgagctaagagattaaa |
3594618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 3587853 - 3587892
Alignment:
| Q |
37 |
ggggatgtgtagctcacttggttgagctaagagattaaaa |
76 |
Q |
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| T |
3587853 |
ggggatgagtagctcacttggttgagctaagggattaaaa |
3587892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 3572664 - 3572700
Alignment:
| Q |
39 |
ggatgtgtagctcacttggttgagctaagagattaaa |
75 |
Q |
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||||| ||| ||||||||||||||||||||||||||| |
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| T |
3572664 |
ggatgagtaactcacttggttgagctaagagattaaa |
3572700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 2906396 - 2906353
Alignment:
| Q |
34 |
agaggggatgtgtagctcacttggttgagctaagagattaaaat |
77 |
Q |
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|||||||||||||| || |||||||||| ||||||||||||||| |
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| T |
2906396 |
agaggggatgtgtaacttacttggttgaactaagagattaaaat |
2906353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 36160031 - 36160076
Alignment:
| Q |
39 |
ggatgtgtagctcacttggttgagctaagagattaaaattgttaaa |
84 |
Q |
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||||| ||||||||||||||||||||| | |||||||| ||||||| |
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| T |
36160031 |
ggatgggtagctcacttggttgagctaggggattaaaagtgttaaa |
36160076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 42874604 - 42874644
Alignment:
| Q |
35 |
gaggggatgtgtagctcacttggttgagctaagagattaaa |
75 |
Q |
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|||||| || |||||||||||||||||||||| |||||||| |
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| T |
42874604 |
gagggggtgggtagctcacttggttgagctaacagattaaa |
42874644 |
T |
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