View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20381_high_48 (Length: 214)
Name: NF20381_high_48
Description: NF20381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20381_high_48 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 4070498 - 4070287
Alignment:
| Q |
1 |
gatgttcatcataacattgaaaatggattcgtcattaaaaatagcgtgcaagatttcgttagtcatatgcgaaatttgatgaccannnnnnnnnnnnaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4070498 |
gatgttcatcataacattgaaaatggattcgtcattaaaaatagcgtgcaagatttcgttagtcatatgcgaaatttgatgaccatttttttttt--aat |
4070401 |
T |
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| Q |
101 |
aattagatcaaaaacataatatacaagtactaccaaaaataaggggtagctatataatttgtaatttggttgattagtactagacttaatatatatttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4070400 |
aattagatcaaaaacataatatacaagtactaccaaaaataaggggtagctatataatttgtaatttggttgattagtactagacttaatatatatttgt |
4070301 |
T |
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| Q |
201 |
ttttgttggttttc |
214 |
Q |
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|||||||||||||| |
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| T |
4070300 |
ttttgttggttttc |
4070287 |
T |
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