View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20381_high_5 (Length: 592)
Name: NF20381_high_5
Description: NF20381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20381_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 58 - 584
Target Start/End: Complemental strand, 32552179 - 32551655
Alignment:
| Q |
58 |
cgtccttttgtacttcttatacgagtaacgagtgtggttaacacatccgtgttcatggtcatggttttgagcatgtattgtttgaatttgatagccaact |
157 |
Q |
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| T |
32552179 |
cgtccttttgtacttcttatacgagta--gagt-------acacatccgtgttcatggtcatggttttgagcatgtattgtttgaatttgatagccaagt |
32552089 |
T |
|
| Q |
158 |
taatcttgtaaatgccattctcaaagcttcaacttttgagaatggttaacaagtgaatataattgctcactatataacatgaat-----gtcaatatctg |
252 |
Q |
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| T |
32552088 |
taatcttgtaaatgccattctcaaagcttcaacttttgagaatagttaacaagtgaatataattgctcactatataacatgaattgaatgtcaatatctg |
32551989 |
T |
|
| Q |
253 |
aatctagccccgtgaattattaatctattatcaccttatttgtattttgcttttcatattttgcaatgaaaccaaataaaatcatttggactctacnnnn |
352 |
Q |
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| T |
32551988 |
aatctagccccgttaattattaatctattatcaccttatttgtattttgtttttcatattttgcgatgaaaccaaataaaatcatttggactctacaaaa |
32551889 |
T |
|
| Q |
353 |
nnnnn--gggtaaactagtaagaactataactaactgtgtcaccgcagttaggtgttgctgtagatagcctttcctagtctttcatgtaactaactttct |
450 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32551888 |
aaaaaaagggtaaactagtaagaactataactaactgtgtcaccgcagttaggtgttgctgtagatagcctttcctagtctttcatgtaactaactttct |
32551789 |
T |
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| Q |
451 |
attgataacaaatctcaacaaatttcagagatgaatacacaatctctcaagtttctatagctttatcgcttttctgttatggtatatagagctttctagt |
550 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32551788 |
attgataacaaatctcaacaaatttcagagatgaatacacaatctctcaagtttctatagctttatcgcttttctgttatggtatatagagctttctagt |
32551689 |
T |
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| Q |
551 |
tccatttctacggcttccgagtctgattcttctc |
584 |
Q |
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| T |
32551688 |
tccatttctacggcttccgagtctgattcttctc |
32551655 |
T |
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