View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20381_high_9 (Length: 517)

Name: NF20381_high_9
Description: NF20381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20381_high_9
NF20381_high_9
[»] chr2 (1 HSPs)
chr2 (11-498)||(40183182-40183663)


Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 11 - 498
Target Start/End: Complemental strand, 40183663 - 40183182
Alignment:
Q  11 cagagagagaaaaaatcaatcacggtgagggtttacgacaaaaatttacgtatgacctactaatagaagaatttcatacttaaactcaaatcacaattcg 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  40183663 cagagagagaaaaaatcaatcacggtgagggtttacgacaaaaatttacgtatgacctactaatagaagaatttcatactcaaactcaaatcacaattcg 40183564  T
Q  111 tacaatgagaaaatttgatcatctatgtcatacatatgattctttagtnnnnnnn----ggcatagatatgattctctaatagccatgaccattgttgtc 206  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||    
T  40183563 tacaatgagaaaatttgattatctatatcatacatatgattctttagtaaaaaaaaaaaggcatagatatgattctctaatagccatgaccattgttgtc 40183464  T
Q  207 gacggtggcttatggcgacgggtcaaaaatccaccataaacatatggtggatgaagtagtggcaaatggcaaaagcacgtggcaaatttaggnnnnnnnt 306  Q
    |||||                |||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||       |    
T  40183463 gacgg----------------gtcagaaatccaccataaacatacggtggatgaagtagtggcaaatggcagaagcacgtggcaaatttaggaaaaaaat 40183380  T
Q  307 tattataaatatatacctgcaaaaacaccaacagtttatcaatatatgccaaaaaccttggacttaatcgacagaaagtatcatttgtttgcaacc---- 402  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  40183379 tattataaatatatacgtgcaaaaacaccaacagtttatcaatatatgccaaaaaccttggacttaatcgacagaaagtatcatttgtttgcaaccaaaa 40183280  T
Q  403 --nnnnnnnnnntgaaaatatcatttgtcacaatcacaatgtgaataacttctcattcaattcaagacttcaaaataacaacgagtcttgctgcaagt 498  Q
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40183279 aaaaaaaaaaaatgaaaatatcatttgtcacaatcacaatgtgaataacttctcattcaattcaagacttcaaaataacaacgagtcttgctgcaagt 40183182  T

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